Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PDLIM1O00151 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.52□□□□□ -0.08
PDLIM1O00151 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PDLIM1O00151 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
PDLIM1O00151 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
PDLIM1O00151 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC14.52□□□□□ -0.08
PDLIM1O00151 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC14.52□□□□□ -0.08
PDLIM1O00151 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.52□□□□□ -0.08
PDLIM1O00151 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.52□□□□□ -0.08
PDLIM1O00151 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC14.52□□□□□ -0.09
PDLIM1O00151 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PDLIM1O00151 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PDLIM1O00151 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC14.52□□□□□ -0.09
PDLIM1O00151 AC004987.2-201ENST00000395959 1148 ntBASIC14.52□□□□□ -0.09
PDLIM1O00151 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.52□□□□□ -0.09
PDLIM1O00151 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
PDLIM1O00151 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.52□□□□□ -0.09
PDLIM1O00151 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
PDLIM1O00151 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC14.52□□□□□ -0.09
PDLIM1O00151 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC14.52□□□□□ -0.09
PDLIM1O00151 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
PDLIM1O00151 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC14.52□□□□□ -0.09
PDLIM1O00151 AC061975.2-201ENST00000581722 295 ntBASIC14.52□□□□□ -0.09
PDLIM1O00151 AC027307.2-201ENST00000591252 911 ntBASIC14.52□□□□□ -0.09
PDLIM1O00151 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC14.52□□□□□ -0.09
PDLIM1O00151 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC14.52□□□□□ -0.09
PDLIM1O00151 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
PDLIM1O00151 AC152010.1-201ENST00000415779 2006 ntBASIC14.52□□□□□ -0.09
PDLIM1O00151 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.52□□□□□ -0.09
PDLIM1O00151 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PDLIM1O00151 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.52□□□□□ -0.09
PDLIM1O00151 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.52□□□□□ -0.09
PDLIM1O00151 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PDLIM1O00151 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.52□□□□□ -0.09
PDLIM1O00151 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PDLIM1O00151 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
PDLIM1O00151 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
PDLIM1O00151 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
PDLIM1O00151 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
PDLIM1O00151 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.52□□□□□ -0.09
PDLIM1O00151 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PDLIM1O00151 RPL31-207ENST00000409711 2328 ntTSL 2 BASIC14.52□□□□□ -0.09
PDLIM1O00151 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PDLIM1O00151 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PDLIM1O00151 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.51□□□□□ -0.09
PDLIM1O00151 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.51□□□□□ -0.09
PDLIM1O00151 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.51□□□□□ -0.09
PDLIM1O00151 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC14.51□□□□□ -0.09
PDLIM1O00151 GOLGA6L17P-202ENST00000614358 1398 ntBASIC14.51□□□□□ -0.09
PDLIM1O00151 YWHAEP7-202ENST00000620903 2455 ntTSL 2 BASIC14.51□□□□□ -0.09
PDLIM1O00151 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC14.51□□□□□ -0.09
PDLIM1O00151 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.51□□□□□ -0.09
PDLIM1O00151 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 PTMS-202ENST00000389462 773 ntTSL 2 BASIC14.51□□□□□ -0.09
PDLIM1O00151 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.51□□□□□ -0.09
PDLIM1O00151 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC14.51□□□□□ -0.09
PDLIM1O00151 PHKG1P2-201ENST00000457537 863 ntBASIC14.51□□□□□ -0.09
PDLIM1O00151 AC023141.5-201ENST00000458585 616 ntBASIC14.51□□□□□ -0.09
PDLIM1O00151 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC14.51□□□□□ -0.09
PDLIM1O00151 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC14.51□□□□□ -0.09
PDLIM1O00151 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.51□□□□□ -0.09
PDLIM1O00151 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.51□□□□□ -0.09
PDLIM1O00151 AP000842.3-202ENST00000569238 1080 ntBASIC14.51□□□□□ -0.09
PDLIM1O00151 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC14.51□□□□□ -0.09
PDLIM1O00151 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.51□□□□□ -0.09
PDLIM1O00151 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14.51□□□□□ -0.09
PDLIM1O00151 AC009093.7-201ENST00000623853 1223 ntBASIC14.51□□□□□ -0.09
PDLIM1O00151 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC14.51□□□□□ -0.09
PDLIM1O00151 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
PDLIM1O00151 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.51□□□□□ -0.09
PDLIM1O00151 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
PDLIM1O00151 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
PDLIM1O00151 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.51□□□□□ -0.09
PDLIM1O00151 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PDLIM1O00151 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
PDLIM1O00151 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
PDLIM1O00151 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.5□□□□□ -0.09
PDLIM1O00151 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms