Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 MEP1AP4-201ENST00000423244 1087 ntBASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 HLA-K-203ENST00000430151 1046 ntBASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 BASP1P1-201ENST00000430708 665 ntBASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 RPL13AP25-201ENST00000484130 612 ntBASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 DOC2GP-202ENST00000514950 1163 ntBASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 REEP4-207ENST00000523293 913 ntTSL 3 BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 TPRX2P-201ENST00000535362 881 ntBASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 AC023310.3-201ENST00000557027 670 ntBASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 AC100756.1-201ENST00000562736 682 ntBASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 AC138749.3-201ENST00000567691 622 ntBASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 RNA5-8SN1-201ENST00000610460 153 ntBASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 AC116165.1-201ENST00000611806 668 ntBASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 RNA5-8SN5-202ENST00000612463 153 ntBASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 RNA5-8SN4-201ENST00000613359 153 ntBASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 AL662799.1-202ENST00000614205 422 ntBASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 RNA5-8SN5-201ENST00000619471 153 ntBASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
HIF3AQ9Y2N7 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
HIF3AQ9Y2N7 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.71□□□□□ -0.22
HIF3AQ9Y2N7 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.71□□□□□ -0.22
HIF3AQ9Y2N7 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
HIF3AQ9Y2N7 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
HIF3AQ9Y2N7 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
HIF3AQ9Y2N7 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.71□□□□□ -0.22
HIF3AQ9Y2N7 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC13.71□□□□□ -0.22
HIF3AQ9Y2N7 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 AC093813.1-201ENST00000605066 256 ntBASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIF3AQ9Y2N7 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms