Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC15.32■□□□□ 0.04
CHFRQ96EP1 AC100757.4-201ENST00000626934 759 ntBASIC15.32■□□□□ 0.04
CHFRQ96EP1 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.32■□□□□ 0.04
CHFRQ96EP1 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHFRQ96EP1 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHFRQ96EP1 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.32■□□□□ 0.04
CHFRQ96EP1 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHFRQ96EP1 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHFRQ96EP1 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHFRQ96EP1 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHFRQ96EP1 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CHFRQ96EP1 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHFRQ96EP1 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHFRQ96EP1 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHFRQ96EP1 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHFRQ96EP1 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHFRQ96EP1 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CHFRQ96EP1 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHFRQ96EP1 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.32■□□□□ 0.04
CHFRQ96EP1 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 AC105917.1-201ENST00000506637 2539 ntBASIC15.31■□□□□ 0.04
CHFRQ96EP1 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 MPV17-204ENST00000399052 749 ntTSL 4 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 PARVG-202ENST00000415224 999 ntTSL 2 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 VDAC1P1-201ENST00000439229 848 ntBASIC15.31■□□□□ 0.04
CHFRQ96EP1 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 RPL18P13-201ENST00000478088 569 ntBASIC15.31■□□□□ 0.04
CHFRQ96EP1 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 AC125604.1-201ENST00000496255 707 ntBASIC15.31■□□□□ 0.04
CHFRQ96EP1 SUPT4H1P2-201ENST00000501248 353 ntBASIC15.31■□□□□ 0.04
CHFRQ96EP1 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 AC103988.2-201ENST00000561804 725 ntBASIC15.31■□□□□ 0.04
CHFRQ96EP1 DUX4L46-201ENST00000566845 751 ntBASIC15.31■□□□□ 0.04
CHFRQ96EP1 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 AC090164.2-201ENST00000611487 516 ntBASIC15.31■□□□□ 0.04
CHFRQ96EP1 SNX1-214ENST00000625244 324 ntTSL 5 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 CDK7-214ENST00000626796 358 ntTSL 5 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CHFRQ96EP1 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHFRQ96EP1 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 AL138725.1-201ENST00000407347 1314 ntBASIC15.3■□□□□ 0.04
CHFRQ96EP1 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 RPS2P36-201ENST00000456516 831 ntBASIC15.3■□□□□ 0.04
CHFRQ96EP1 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 TMEM198B-204ENST00000484016 896 ntBASIC15.3■□□□□ 0.04
CHFRQ96EP1 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHFRQ96EP1 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC15.3■□□□□ 0.04
CHFRQ96EP1 AL161670.2-201ENST00000557650 1227 ntBASIC15.3■□□□□ 0.04
CHFRQ96EP1 PRKXP1-201ENST00000561423 1122 ntBASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms