Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 AC093433.1-201ENST00000458048 571 ntBASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 BTNL10-201ENST00000595971 695 ntBASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP4CQ96CF2 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 NSL1-201ENST00000366976 722 ntTSL 2 BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 AC234783.1-201ENST00000441761 496 ntBASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 AC022210.1-201ENST00000449856 793 ntBASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 AC106760.1-201ENST00000508690 800 ntBASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 ORC6-206ENST00000568364 888 ntTSL 5 BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms