Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RDX-218ENST00000544551 4117 ntTSL 2 BASIC12.69□□□□□ -0.38
HOXA1P49639 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC12.69□□□□□ -0.38
HOXA1P49639 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
HOXA1P49639 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC12.69□□□□□ -0.38
HOXA1P49639 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC12.69□□□□□ -0.38
HOXA1P49639 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
HOXA1P49639 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
HOXA1P49639 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC12.69□□□□□ -0.38
HOXA1P49639 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC12.69□□□□□ -0.38
HOXA1P49639 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC12.69□□□□□ -0.38
HOXA1P49639 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC12.68□□□□□ -0.38
HOXA1P49639 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC12.68□□□□□ -0.38
HOXA1P49639 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
HOXA1P49639 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
HOXA1P49639 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC12.68□□□□□ -0.38
HOXA1P49639 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC12.68□□□□□ -0.38
HOXA1P49639 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC12.68□□□□□ -0.38
HOXA1P49639 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
HOXA1P49639 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
HOXA1P49639 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC12.68□□□□□ -0.38
HOXA1P49639 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC12.68□□□□□ -0.38
HOXA1P49639 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 AP002472.1-201ENST00000577490 586 ntBASIC12.68□□□□□ -0.38
HOXA1P49639 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC12.68□□□□□ -0.38
HOXA1P49639 AC027307.2-201ENST00000591252 911 ntBASIC12.68□□□□□ -0.38
HOXA1P49639 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC12.68□□□□□ -0.38
HOXA1P49639 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC12.68□□□□□ -0.38
HOXA1P49639 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC12.68□□□□□ -0.38
HOXA1P49639 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC12.68□□□□□ -0.38
HOXA1P49639 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
HOXA1P49639 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 ARAF-203ENST00000377045 2458 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC12.68□□□□□ -0.38
HOXA1P49639 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
HOXA1P49639 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC12.68□□□□□ -0.38
HOXA1P49639 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
HOXA1P49639 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXA1P49639 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
HOXA1P49639 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC12.67□□□□□ -0.38
HOXA1P49639 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
HOXA1P49639 DYNC1LI1-201ENST00000273130 2504 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXA1P49639 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC12.67□□□□□ -0.38
HOXA1P49639 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXA1P49639 AC023024.2-201ENST00000623561 1993 ntBASIC12.67□□□□□ -0.38
HOXA1P49639 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
HOXA1P49639 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
HOXA1P49639 AC134407.3-201ENST00000624035 2139 ntBASIC12.67□□□□□ -0.38
HOXA1P49639 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXA1P49639 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXA1P49639 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC12.67□□□□□ -0.38
HOXA1P49639 AC131212.3-201ENST00000624087 4219 ntBASIC12.67□□□□□ -0.38
HOXA1P49639 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 HADH-202ENST00000403312 1752 ntTSL 5 BASIC12.67□□□□□ -0.38
HOXA1P49639 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
HOXA1P49639 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXA1P49639 NEK7-201ENST00000367383 586 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXA1P49639 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC12.67□□□□□ -0.38
HOXA1P49639 TPM4P1-201ENST00000436100 807 ntBASIC12.67□□□□□ -0.38
HOXA1P49639 ELP6-209ENST00000446787 894 ntTSL 3 BASIC12.67□□□□□ -0.38
HOXA1P49639 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms