Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL18A1P39060 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
COL18A1P39060 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
COL18A1P39060 ACE3P-201ENST00000423435 1973 ntBASIC19.32■□□□□ 0.68
COL18A1P39060 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
COL18A1P39060 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL18A1P39060 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC19.32■□□□□ 0.68
COL18A1P39060 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL18A1P39060 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL18A1P39060 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL18A1P39060 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC19.32■□□□□ 0.68
COL18A1P39060 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC19.32■□□□□ 0.68
COL18A1P39060 BCAS2P2-201ENST00000425064 674 ntBASIC19.32■□□□□ 0.68
COL18A1P39060 SCARNA12-201ENST00000459155 270 ntBASIC19.32■□□□□ 0.68
COL18A1P39060 AC084752.1-201ENST00000509766 622 ntBASIC19.32■□□□□ 0.68
COL18A1P39060 MIR4472-1-201ENST00000584349 80 ntBASIC19.32■□□□□ 0.68
COL18A1P39060 AC011247.3-201ENST00000603297 438 ntBASIC19.32■□□□□ 0.68
COL18A1P39060 AC140113.1-201ENST00000603467 169 ntBASIC19.32■□□□□ 0.68
COL18A1P39060 AP000322.3-201ENST00000608665 388 ntBASIC19.32■□□□□ 0.68
COL18A1P39060 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC19.32■□□□□ 0.68
COL18A1P39060 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC19.32■□□□□ 0.68
COL18A1P39060 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL18A1P39060 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL18A1P39060 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC19.31■□□□□ 0.68
COL18A1P39060 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
COL18A1P39060 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL18A1P39060 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL18A1P39060 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.31■□□□□ 0.68
COL18A1P39060 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL18A1P39060 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL18A1P39060 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC19.31■□□□□ 0.68
COL18A1P39060 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC19.31■□□□□ 0.68
COL18A1P39060 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL18A1P39060 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC19.31■□□□□ 0.68
COL18A1P39060 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC19.31■□□□□ 0.68
COL18A1P39060 RPL18AP8-201ENST00000486071 528 ntBASIC19.31■□□□□ 0.68
COL18A1P39060 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC19.31■□□□□ 0.68
COL18A1P39060 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC19.31■□□□□ 0.68
COL18A1P39060 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC19.31■□□□□ 0.68
COL18A1P39060 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC19.31■□□□□ 0.68
COL18A1P39060 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC19.31■□□□□ 0.68
COL18A1P39060 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC19.31■□□□□ 0.68
COL18A1P39060 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL18A1P39060 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
COL18A1P39060 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
COL18A1P39060 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL18A1P39060 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC19.31■□□□□ 0.68
COL18A1P39060 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
COL18A1P39060 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
COL18A1P39060 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL18A1P39060 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL18A1P39060 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL18A1P39060 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL18A1P39060 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC19.3■□□□□ 0.68
COL18A1P39060 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
COL18A1P39060 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL18A1P39060 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL18A1P39060 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL18A1P39060 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.3■□□□□ 0.68
COL18A1P39060 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL18A1P39060 BAK1P1-201ENST00000317045 636 ntBASIC19.3■□□□□ 0.68
COL18A1P39060 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
COL18A1P39060 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
COL18A1P39060 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL18A1P39060 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL18A1P39060 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC19.3■□□□□ 0.68
COL18A1P39060 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL18A1P39060 PPP1R2P4-201ENST00000424051 595 ntBASIC19.3■□□□□ 0.68
COL18A1P39060 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC19.3■□□□□ 0.68
COL18A1P39060 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC19.3■□□□□ 0.68
COL18A1P39060 PPIA-208ENST00000489459 907 ntTSL 2 BASIC19.3■□□□□ 0.68
COL18A1P39060 IGHV1-12-201ENST00000518307 205 ntBASIC19.3■□□□□ 0.68
COL18A1P39060 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC19.3■□□□□ 0.68
COL18A1P39060 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC19.3■□□□□ 0.68
COL18A1P39060 PPIA-210ENST00000620047 827 ntTSL 5 BASIC19.3■□□□□ 0.68
COL18A1P39060 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
COL18A1P39060 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC19.3■□□□□ 0.68
COL18A1P39060 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL18A1P39060 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL18A1P39060 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL18A1P39060 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL18A1P39060 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
COL18A1P39060 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC19.3■□□□□ 0.68
COL18A1P39060 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL18A1P39060 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL18A1P39060 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
COL18A1P39060 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC19.3■□□□□ 0.68
COL18A1P39060 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL18A1P39060 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC19.29■□□□□ 0.68
COL18A1P39060 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
COL18A1P39060 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL18A1P39060 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC19.29■□□□□ 0.68
COL18A1P39060 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL18A1P39060 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms