Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC13.51□□□□□ -0.25
HOXC12P31275 SLC9A3P3-201ENST00000457608 2229 ntBASIC13.51□□□□□ -0.25
HOXC12P31275 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC13.51□□□□□ -0.25
HOXC12P31275 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC13.51□□□□□ -0.25
HOXC12P31275 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
HOXC12P31275 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HOXC12P31275 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.5□□□□□ -0.25
HOXC12P31275 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC13.5□□□□□ -0.25
HOXC12P31275 AL138799.1-201ENST00000448213 1675 ntBASIC13.5□□□□□ -0.25
HOXC12P31275 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC13.5□□□□□ -0.25
HOXC12P31275 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HOXC12P31275 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.5□□□□□ -0.25
HOXC12P31275 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.5□□□□□ -0.25
HOXC12P31275 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
HOXC12P31275 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
HOXC12P31275 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.5□□□□□ -0.25
HOXC12P31275 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC13.5□□□□□ -0.25
HOXC12P31275 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 AC005229.1-201ENST00000392885 409 ntBASIC13.5□□□□□ -0.25
HOXC12P31275 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC13.5□□□□□ -0.25
HOXC12P31275 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HOXC12P31275 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13.5□□□□□ -0.25
HOXC12P31275 ARL16-210ENST00000574938 751 ntTSL 2 BASIC13.5□□□□□ -0.25
HOXC12P31275 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.5□□□□□ -0.25
HOXC12P31275 MIR3615-201ENST00000581999 87 ntBASIC13.5□□□□□ -0.25
HOXC12P31275 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.5□□□□□ -0.25
HOXC12P31275 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
HOXC12P31275 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 ENTPD4-202ENST00000358689 5861 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
HOXC12P31275 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXC12P31275 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
HOXC12P31275 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXC12P31275 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXC12P31275 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXC12P31275 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXC12P31275 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXC12P31275 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
HOXC12P31275 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXC12P31275 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXC12P31275 WARS-232ENST00000556645 2508 ntTSL 5 BASIC13.49□□□□□ -0.25
HOXC12P31275 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXC12P31275 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXC12P31275 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXC12P31275 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
HOXC12P31275 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXC12P31275 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXC12P31275 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXC12P31275 AC020658.6-201ENST00000623564 1870 ntBASIC13.49□□□□□ -0.25
HOXC12P31275 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.49□□□□□ -0.25
HOXC12P31275 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXC12P31275 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXC12P31275 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
HOXC12P31275 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXC12P31275 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXC12P31275 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HOXC12P31275 GPAA1P2-201ENST00000417923 928 ntBASIC13.49□□□□□ -0.25
HOXC12P31275 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC13.49□□□□□ -0.25
HOXC12P31275 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC13.49□□□□□ -0.25
HOXC12P31275 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.49□□□□□ -0.25
HOXC12P31275 AC068587.3-201ENST00000526613 355 ntBASIC13.49□□□□□ -0.25
HOXC12P31275 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
HOXC12P31275 AP000812.2-201ENST00000538934 718 ntBASIC13.49□□□□□ -0.25
HOXC12P31275 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC13.49□□□□□ -0.25
HOXC12P31275 EMC4-209ENST00000559421 497 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXC12P31275 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC13.49□□□□□ -0.25
HOXC12P31275 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXC12P31275 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.49□□□□□ -0.25
HOXC12P31275 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC13.49□□□□□ -0.25
HOXC12P31275 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXC12P31275 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms