Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 AC074338.1-201ENST00000416825 156 ntBASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC39Q9UFE4 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC39Q9UFE4 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC39Q9UFE4 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC39Q9UFE4 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 RPL5P21-201ENST00000404620 815 ntBASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 AC097493.3-201ENST00000509725 367 ntBASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 SDHAP3-202ENST00000515467 728 ntBASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 AC010336.2-201ENST00000564226 506 ntBASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 AC074044.1-201ENST00000609673 707 ntBASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 AC087499.5-201ENST00000452760 1342 ntBASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC39Q9UFE4 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 MIR943-201ENST00000401286 94 ntBASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 TREML5P-201ENST00000421694 576 ntBASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms