Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 TSSK5P-201ENST00000423978 907 ntBASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 KRT18P43-201ENST00000469825 1281 ntBASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 AC025678.2-201ENST00000562061 970 ntBASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 AC011467.4-201ENST00000594891 528 ntBASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 AC004790.1-201ENST00000612686 536 ntBASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 AC004461.2-201ENST00000629517 803 ntBASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
TRIM56Q9BRZ2 AC104581.4-201ENST00000623126 3052 ntBASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 AC087499.5-201ENST00000452760 1342 ntBASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 FAM8A3P-201ENST00000427218 844 ntBASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 SPCS2P1-201ENST00000561636 679 ntBASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 AL590560.3-201ENST00000623350 461 ntBASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 AL157414.3-201ENST00000624276 1954 ntBASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRIM56Q9BRZ2 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms