Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 ANKRD19P-201ENST00000338192 862 ntBASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 USP32P1-208ENST00000506594 1164 ntBASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 AC025181.2-201ENST00000606994 802 ntBASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 MIR6775-201ENST00000617557 69 ntBASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 SERF2-217ENST00000630046 862 ntTSL 5 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP4CQ96CF2 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 FAM45BP-202ENST00000592932 1624 ntBASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 HIST1H2BPS3-201ENST00000419683 341 ntBASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 AL162726.2-201ENST00000438986 1017 ntBASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 AC017083.2-201ENST00000608069 979 ntBASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 AL162274.1-201ENST00000617191 1098 ntBASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 GPR39-203ENST00000622084 900 ntTSL 5 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 CICP11-201ENST00000434745 2827 ntBASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP4CQ96CF2 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 CELP-203ENST00000624767 2414 ntTSL 5 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 SUN1-204ENST00000403868 978 ntTSL 2 BASIC18.12■□□□□ 0.49
CHMP4CQ96CF2 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms