Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
HPS3Q969F9 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.79■□□□□ 0.28
HPS3Q969F9 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
HPS3Q969F9 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HPS3Q969F9 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HPS3Q969F9 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
HPS3Q969F9 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HPS3Q969F9 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HPS3Q969F9 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.79■□□□□ 0.28
HPS3Q969F9 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
HPS3Q969F9 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.79■□□□□ 0.28
HPS3Q969F9 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
HPS3Q969F9 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HPS3Q969F9 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC16.79■□□□□ 0.28
HPS3Q969F9 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.79■□□□□ 0.28
HPS3Q969F9 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.79■□□□□ 0.28
HPS3Q969F9 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.79■□□□□ 0.28
HPS3Q969F9 AC026434.2-201ENST00000506094 1078 ntBASIC16.79■□□□□ 0.28
HPS3Q969F9 AC004466.1-201ENST00000599515 1080 ntBASIC16.79■□□□□ 0.28
HPS3Q969F9 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.79■□□□□ 0.28
HPS3Q969F9 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.79■□□□□ 0.28
HPS3Q969F9 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC16.79■□□□□ 0.28
HPS3Q969F9 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HPS3Q969F9 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HPS3Q969F9 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HPS3Q969F9 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC16.79■□□□□ 0.28
HPS3Q969F9 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC16.79■□□□□ 0.28
HPS3Q969F9 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.79■□□□□ 0.28
HPS3Q969F9 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
HPS3Q969F9 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HPS3Q969F9 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
HPS3Q969F9 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC16.79■□□□□ 0.28
HPS3Q969F9 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HPS3Q969F9 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
HPS3Q969F9 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
HPS3Q969F9 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 AC007191.1-201ENST00000623179 2995 ntBASIC16.78■□□□□ 0.28
HPS3Q969F9 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC16.78■□□□□ 0.28
HPS3Q969F9 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
HPS3Q969F9 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HPS3Q969F9 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
HPS3Q969F9 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 AL645937.2-201ENST00000396808 931 ntBASIC16.78■□□□□ 0.28
HPS3Q969F9 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.78■□□□□ 0.28
HPS3Q969F9 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.78■□□□□ 0.28
HPS3Q969F9 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
HPS3Q969F9 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HPS3Q969F9 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC16.78■□□□□ 0.28
HPS3Q969F9 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.78■□□□□ 0.28
HPS3Q969F9 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.78■□□□□ 0.28
HPS3Q969F9 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.78■□□□□ 0.28
HPS3Q969F9 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
HPS3Q969F9 API5-203ENST00000455725 2257 ntTSL 2 BASIC16.78■□□□□ 0.28
HPS3Q969F9 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC16.78■□□□□ 0.28
HPS3Q969F9 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
HPS3Q969F9 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC16.78■□□□□ 0.28
HPS3Q969F9 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16.78■□□□□ 0.28
HPS3Q969F9 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.78■□□□□ 0.28
HPS3Q969F9 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 AC067930.6-201ENST00000623257 4947 ntBASIC16.78■□□□□ 0.28
HPS3Q969F9 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
HPS3Q969F9 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HPS3Q969F9 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
HPS3Q969F9 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
HPS3Q969F9 AC007292.2-201ENST00000593524 1812 ntBASIC16.77■□□□□ 0.28
HPS3Q969F9 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC16.77■□□□□ 0.28
HPS3Q969F9 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC16.77■□□□□ 0.28
HPS3Q969F9 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.77■□□□□ 0.28
HPS3Q969F9 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HPS3Q969F9 AC055811.4-201ENST00000624039 1754 ntBASIC16.77■□□□□ 0.28
HPS3Q969F9 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HPS3Q969F9 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC16.77■□□□□ 0.28
HPS3Q969F9 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
HPS3Q969F9 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HPS3Q969F9 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HPS3Q969F9 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
HPS3Q969F9 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HPS3Q969F9 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HPS3Q969F9 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
HPS3Q969F9 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HPS3Q969F9 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
HPS3Q969F9 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HPS3Q969F9 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HPS3Q969F9 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.77■□□□□ 0.28
HPS3Q969F9 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.77■□□□□ 0.28
HPS3Q969F9 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.77■□□□□ 0.28
HPS3Q969F9 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms