Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 AC104581.4-201ENST00000623126 3052 ntBASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
ATG4AQ8WYN0 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 MIR943-201ENST00000401286 94 ntBASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 HLA-K-203ENST00000430151 1046 ntBASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 FAM86GP-201ENST00000448322 971 ntBASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 AC009477.1-201ENST00000452936 217 ntBASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 AC004066.1-201ENST00000502488 802 ntBASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 IGHV3-42-201ENST00000520410 361 ntBASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 DUX4L27-201ENST00000554796 1261 ntBASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
ATG4AQ8WYN0 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 AC023090.2-201ENST00000625182 2110 ntBASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 TKT-201ENST00000296289 1931 ntTSL 5 BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.74■□□□□ 0.11
ATG4AQ8WYN0 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms