Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
ABCA4P78363 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC13.04□□□□□ -0.32
ABCA4P78363 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
ABCA4P78363 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
ABCA4P78363 CMC1-204ENST00000423894 549 ntTSL 2 BASIC13.04□□□□□ -0.32
ABCA4P78363 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.04□□□□□ -0.32
ABCA4P78363 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC13.04□□□□□ -0.32
ABCA4P78363 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.04□□□□□ -0.32
ABCA4P78363 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
ABCA4P78363 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC13.04□□□□□ -0.32
ABCA4P78363 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 AC006480.2-201ENST00000609770 1337 ntBASIC13.04□□□□□ -0.32
ABCA4P78363 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC13.04□□□□□ -0.32
ABCA4P78363 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
ABCA4P78363 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
ABCA4P78363 ACE-203ENST00000413513 2237 ntTSL 2 BASIC13.04□□□□□ -0.32
ABCA4P78363 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
ABCA4P78363 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
ABCA4P78363 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
ABCA4P78363 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
ABCA4P78363 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
ABCA4P78363 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
ABCA4P78363 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
ABCA4P78363 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
ABCA4P78363 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC13.04□□□□□ -0.32
ABCA4P78363 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 HLA-K-203ENST00000430151 1046 ntBASIC13.04□□□□□ -0.32
ABCA4P78363 MESTP3-201ENST00000503460 968 ntBASIC13.04□□□□□ -0.32
ABCA4P78363 NUP210P1-202ENST00000504322 710 ntBASIC13.04□□□□□ -0.32
ABCA4P78363 MARK2P5-201ENST00000507649 634 ntBASIC13.04□□□□□ -0.32
ABCA4P78363 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.04□□□□□ -0.32
ABCA4P78363 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.04□□□□□ -0.32
ABCA4P78363 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC13.04□□□□□ -0.32
ABCA4P78363 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC13.03□□□□□ -0.32
ABCA4P78363 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
ABCA4P78363 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC13.03□□□□□ -0.32
ABCA4P78363 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
ABCA4P78363 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
ABCA4P78363 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 HNRNPA1P63-201ENST00000427917 963 ntBASIC13.03□□□□□ -0.32
ABCA4P78363 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC13.03□□□□□ -0.32
ABCA4P78363 PTK2-225ENST00000520892 571 ntTSL 4 BASIC13.03□□□□□ -0.32
ABCA4P78363 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC13.03□□□□□ -0.32
ABCA4P78363 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13.03□□□□□ -0.32
ABCA4P78363 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.03□□□□□ -0.32
ABCA4P78363 DUX4L47-201ENST00000566374 394 ntBASIC13.03□□□□□ -0.32
ABCA4P78363 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.03□□□□□ -0.32
ABCA4P78363 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC13.03□□□□□ -0.32
ABCA4P78363 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
ABCA4P78363 CLUHP2-201ENST00000426660 1303 ntBASIC13.03□□□□□ -0.32
ABCA4P78363 AC090616.6-203ENST00000579186 1945 ntBASIC13.03□□□□□ -0.32
ABCA4P78363 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
ABCA4P78363 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.03□□□□□ -0.32
ABCA4P78363 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC13.03□□□□□ -0.32
ABCA4P78363 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 AC020916.1-201ENST00000587762 1774 ntBASIC13.03□□□□□ -0.32
ABCA4P78363 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
ABCA4P78363 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA4P78363 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC13.03□□□□□ -0.32
ABCA4P78363 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms