Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 AL360270.3-201ENST00000609118 1348 ntBASIC14.9□□□□□ -0.02
CDH13P55290 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.9□□□□□ -0.02
CDH13P55290 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH13P55290 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH13P55290 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
CDH13P55290 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH13P55290 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 SBF1P1-201ENST00000444527 5631 ntBASIC14.89□□□□□ -0.03
CDH13P55290 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH13P55290 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH13P55290 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
CDH13P55290 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.89□□□□□ -0.03
CDH13P55290 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.89□□□□□ -0.03
CDH13P55290 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.89□□□□□ -0.03
CDH13P55290 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH13P55290 SPDYE18-201ENST00000510091 1050 ntBASIC14.89□□□□□ -0.03
CDH13P55290 IGHV3-42-201ENST00000520410 361 ntBASIC14.89□□□□□ -0.03
CDH13P55290 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CDH13P55290 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH13P55290 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.89□□□□□ -0.03
CDH13P55290 AC009407.1-201ENST00000568958 598 ntBASIC14.89□□□□□ -0.03
CDH13P55290 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.89□□□□□ -0.03
CDH13P55290 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.89□□□□□ -0.03
CDH13P55290 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH13P55290 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.89□□□□□ -0.03
CDH13P55290 AP001160.2-201ENST00000596071 487 ntBASIC14.89□□□□□ -0.03
CDH13P55290 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CDH13P55290 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
CDH13P55290 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH13P55290 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH13P55290 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH13P55290 CLK3P2-201ENST00000427566 1453 ntBASIC14.89□□□□□ -0.03
CDH13P55290 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.88□□□□□ -0.03
CDH13P55290 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDH13P55290 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH13P55290 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH13P55290 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
CDH13P55290 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH13P55290 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
CDH13P55290 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
CDH13P55290 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CDH13P55290 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CDH13P55290 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.88□□□□□ -0.03
CDH13P55290 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CDH13P55290 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.88□□□□□ -0.03
CDH13P55290 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.88□□□□□ -0.03
CDH13P55290 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.88□□□□□ -0.03
CDH13P55290 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDH13P55290 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.88□□□□□ -0.03
CDH13P55290 AC241585.1-201ENST00000433527 519 ntBASIC14.88□□□□□ -0.03
CDH13P55290 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH13P55290 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.88□□□□□ -0.03
CDH13P55290 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.88□□□□□ -0.03
CDH13P55290 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.88□□□□□ -0.03
CDH13P55290 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH13P55290 MEIS3P1-201ENST00000495167 958 ntBASIC14.88□□□□□ -0.03
CDH13P55290 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
CDH13P55290 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.88□□□□□ -0.03
CDH13P55290 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.88□□□□□ -0.03
CDH13P55290 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.88□□□□□ -0.03
CDH13P55290 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CDH13P55290 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH13P55290 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDH13P55290 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH13P55290 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH13P55290 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
CDH13P55290 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH13P55290 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDH13P55290 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.88□□□□□ -0.03
CDH13P55290 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CDH13P55290 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH13P55290 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CDH13P55290 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CDH13P55290 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CDH13P55290 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CDH13P55290 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CDH13P55290 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CDH13P55290 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CDH13P55290 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CDH13P55290 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CDH13P55290 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CDH13P55290 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms