Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15.82■□□□□ 0.12
CDH6P55285 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.82■□□□□ 0.12
CDH6P55285 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.82■□□□□ 0.12
CDH6P55285 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.82■□□□□ 0.12
CDH6P55285 CHCHD2P3-201ENST00000603038 451 ntBASIC15.82■□□□□ 0.12
CDH6P55285 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDH6P55285 AC007431.3-201ENST00000623221 587 ntBASIC15.82■□□□□ 0.12
CDH6P55285 BX539320.1-201ENST00000623759 877 ntBASIC15.82■□□□□ 0.12
CDH6P55285 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.82■□□□□ 0.12
CDH6P55285 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH6P55285 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH6P55285 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CDH6P55285 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDH6P55285 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CDH6P55285 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CDH6P55285 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.82■□□□□ 0.12
CDH6P55285 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH6P55285 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH6P55285 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH6P55285 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH6P55285 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH6P55285 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH6P55285 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH6P55285 FAM45BP-202ENST00000592932 1624 ntBASIC15.82■□□□□ 0.12
CDH6P55285 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDH6P55285 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.82■□□□□ 0.12
CDH6P55285 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH6P55285 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH6P55285 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.82■□□□□ 0.12
CDH6P55285 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDH6P55285 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
CDH6P55285 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH6P55285 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CDH6P55285 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
CDH6P55285 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH6P55285 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CDH6P55285 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH6P55285 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 PIN1P1-201ENST00000412108 996 ntBASIC15.81■□□□□ 0.12
CDH6P55285 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.81■□□□□ 0.12
CDH6P55285 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH6P55285 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH6P55285 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.81■□□□□ 0.12
CDH6P55285 TERF1P3-201ENST00000505638 1227 ntBASIC15.81■□□□□ 0.12
CDH6P55285 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.81■□□□□ 0.12
CDH6P55285 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH6P55285 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.81■□□□□ 0.12
CDH6P55285 AC092552.1-201ENST00000547243 906 ntBASIC15.81■□□□□ 0.12
CDH6P55285 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH6P55285 AL359711.2-201ENST00000563105 872 ntBASIC15.81■□□□□ 0.12
CDH6P55285 SPDYE22P-201ENST00000582158 798 ntBASIC15.81■□□□□ 0.12
CDH6P55285 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CDH6P55285 YTHDF3-AS1-201ENST00000603538 718 ntBASIC15.81■□□□□ 0.12
CDH6P55285 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.81■□□□□ 0.12
CDH6P55285 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CDH6P55285 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
CDH6P55285 AL137783.1-201ENST00000623494 1896 ntBASIC15.81■□□□□ 0.12
CDH6P55285 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.81■□□□□ 0.12
CDH6P55285 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CDH6P55285 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.81■□□□□ 0.12
CDH6P55285 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDH6P55285 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 MTHFR-210ENST00000641407 2387 ntBASIC15.8■□□□□ 0.12
CDH6P55285 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.8■□□□□ 0.12
CDH6P55285 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CDH6P55285 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.8■□□□□ 0.12
CDH6P55285 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.8■□□□□ 0.12
CDH6P55285 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
CDH6P55285 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH6P55285 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.8■□□□□ 0.12
CDH6P55285 KRT8P22-201ENST00000562317 1415 ntBASIC15.8■□□□□ 0.12
CDH6P55285 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC15.8■□□□□ 0.12
CDH6P55285 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.8■□□□□ 0.12
CDH6P55285 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.8■□□□□ 0.12
CDH6P55285 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
CDH6P55285 NUS1P3-201ENST00000423502 862 ntBASIC15.8■□□□□ 0.12
CDH6P55285 MYCLP2-201ENST00000449268 967 ntBASIC15.8■□□□□ 0.12
CDH6P55285 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.8■□□□□ 0.12
CDH6P55285 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms