Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC12.7□□□□□ -0.38
HOXA1P49639 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 SETD3-204ENST00000436070 2592 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
HOXA1P49639 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC12.7□□□□□ -0.38
HOXA1P49639 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC12.7□□□□□ -0.38
HOXA1P49639 PP14571-201ENST00000404327 934 ntTSL 2 BASIC12.7□□□□□ -0.38
HOXA1P49639 AL645939.2-201ENST00000427340 991 ntBASIC12.7□□□□□ -0.38
HOXA1P49639 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC12.7□□□□□ -0.38
HOXA1P49639 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC12.7□□□□□ -0.38
HOXA1P49639 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC12.7□□□□□ -0.38
HOXA1P49639 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
HOXA1P49639 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC12.7□□□□□ -0.38
HOXA1P49639 AL138918.1-201ENST00000568306 659 ntBASIC12.7□□□□□ -0.38
HOXA1P49639 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
HOXA1P49639 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC12.7□□□□□ -0.38
HOXA1P49639 MIR4313-201ENST00000580760 101 ntBASIC12.7□□□□□ -0.38
HOXA1P49639 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 AL450472.2-201ENST00000603663 1156 ntBASIC12.7□□□□□ -0.38
HOXA1P49639 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
HOXA1P49639 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC12.7□□□□□ -0.38
HOXA1P49639 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 HOXA7-201ENST00000242159 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
HOXA1P49639 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
HOXA1P49639 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC12.7□□□□□ -0.38
HOXA1P49639 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
HOXA1P49639 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC12.7□□□□□ -0.38
HOXA1P49639 C1orf109-201ENST00000358011 2355 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
HOXA1P49639 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC12.7□□□□□ -0.38
HOXA1P49639 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
HOXA1P49639 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC12.7□□□□□ -0.38
HOXA1P49639 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC12.69□□□□□ -0.38
HOXA1P49639 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
HOXA1P49639 KRT8P44-201ENST00000441609 1350 ntBASIC12.69□□□□□ -0.38
HOXA1P49639 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 MST1P2-201ENST00000457982 2291 ntBASIC12.69□□□□□ -0.38
HOXA1P49639 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
HOXA1P49639 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
HOXA1P49639 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC12.69□□□□□ -0.38
HOXA1P49639 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
HOXA1P49639 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 FAM118A-201ENST00000216214 3458 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
HOXA1P49639 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
HOXA1P49639 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC12.69□□□□□ -0.38
HOXA1P49639 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC12.69□□□□□ -0.38
HOXA1P49639 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
HOXA1P49639 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
HOXA1P49639 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
HOXA1P49639 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC12.69□□□□□ -0.38
HOXA1P49639 RPS8P6-201ENST00000426177 609 ntBASIC12.69□□□□□ -0.38
HOXA1P49639 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC12.69□□□□□ -0.38
HOXA1P49639 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC12.69□□□□□ -0.38
HOXA1P49639 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC12.69□□□□□ -0.38
HOXA1P49639 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC12.69□□□□□ -0.38
HOXA1P49639 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC12.69□□□□□ -0.38
HOXA1P49639 PP7080-204ENST00000510714 601 ntTSL 3 BASIC12.69□□□□□ -0.38
HOXA1P49639 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC12.69□□□□□ -0.38
HOXA1P49639 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
HOXA1P49639 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC12.69□□□□□ -0.38
HOXA1P49639 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC12.69□□□□□ -0.38
HOXA1P49639 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 AC104692.2-201ENST00000603054 253 ntBASIC12.69□□□□□ -0.38
HOXA1P49639 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC12.69□□□□□ -0.38
HOXA1P49639 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HOXA1P49639 ZEB1-AS1-208ENST00000607166 2503 ntBASIC12.69□□□□□ -0.38
HOXA1P49639 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC12.69□□□□□ -0.38
HOXA1P49639 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 8 ms