Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.73■□□□□ 0.11
PTPN9P43378 AC132938.2-201ENST00000579188 680 ntBASIC15.73■□□□□ 0.11
PTPN9P43378 GNRHR2-203ENST00000581100 1187 ntBASIC15.73■□□□□ 0.11
PTPN9P43378 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
PTPN9P43378 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.73■□□□□ 0.11
PTPN9P43378 AC008735.3-201ENST00000596646 500 ntBASIC15.73■□□□□ 0.11
PTPN9P43378 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.73■□□□□ 0.11
PTPN9P43378 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.73■□□□□ 0.11
PTPN9P43378 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC15.73■□□□□ 0.11
PTPN9P43378 AL591163.1-201ENST00000641757 987 ntBASIC15.73■□□□□ 0.11
PTPN9P43378 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.73■□□□□ 0.11
PTPN9P43378 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.73■□□□□ 0.11
PTPN9P43378 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.73■□□□□ 0.11
PTPN9P43378 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
PTPN9P43378 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.73■□□□□ 0.11
PTPN9P43378 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.73■□□□□ 0.11
PTPN9P43378 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.72■□□□□ 0.11
PTPN9P43378 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.72■□□□□ 0.11
PTPN9P43378 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.72■□□□□ 0.11
PTPN9P43378 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
PTPN9P43378 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.72■□□□□ 0.11
PTPN9P43378 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.72■□□□□ 0.11
PTPN9P43378 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.72■□□□□ 0.11
PTPN9P43378 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
PTPN9P43378 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.72■□□□□ 0.11
PTPN9P43378 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 TLE1P1-201ENST00000422965 589 ntBASIC15.72■□□□□ 0.11
PTPN9P43378 AC245100.3-201ENST00000441281 285 ntBASIC15.72■□□□□ 0.11
PTPN9P43378 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.72■□□□□ 0.11
PTPN9P43378 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.72■□□□□ 0.11
PTPN9P43378 AL355864.2-201ENST00000447420 863 ntBASIC15.72■□□□□ 0.11
PTPN9P43378 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.72■□□□□ 0.11
PTPN9P43378 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.72■□□□□ 0.11
PTPN9P43378 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.72■□□□□ 0.11
PTPN9P43378 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
PTPN9P43378 RN7SL48P-201ENST00000579283 293 ntBASIC15.72■□□□□ 0.11
PTPN9P43378 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.72■□□□□ 0.11
PTPN9P43378 AC004466.1-201ENST00000599515 1080 ntBASIC15.72■□□□□ 0.11
PTPN9P43378 LINC02084-201ENST00000606069 1096 ntBASIC15.72■□□□□ 0.11
PTPN9P43378 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.72■□□□□ 0.11
PTPN9P43378 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 AC007292.2-201ENST00000593524 1812 ntBASIC15.72■□□□□ 0.11
PTPN9P43378 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
PTPN9P43378 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.72■□□□□ 0.11
PTPN9P43378 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 AC106881.1-201ENST00000605849 3329 ntBASIC15.72■□□□□ 0.11
PTPN9P43378 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.72■□□□□ 0.11
PTPN9P43378 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.72■□□□□ 0.11
PTPN9P43378 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN9P43378 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.72■□□□□ 0.11
PTPN9P43378 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
PTPN9P43378 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PTPN9P43378 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
PTPN9P43378 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.71■□□□□ 0.11
PTPN9P43378 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN9P43378 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN9P43378 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN9P43378 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
PTPN9P43378 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN9P43378 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN9P43378 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN9P43378 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.71■□□□□ 0.11
PTPN9P43378 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN9P43378 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN9P43378 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN9P43378 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN9P43378 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN9P43378 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
PTPN9P43378 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN9P43378 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.71■□□□□ 0.11
PTPN9P43378 SERF2-209ENST00000409646 559 ntTSL 4 BASIC15.71■□□□□ 0.11
PTPN9P43378 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms