Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC11.81□□□□□ -0.52
CXCL1P09341 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
CXCL1P09341 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
CXCL1P09341 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
CXCL1P09341 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
CXCL1P09341 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC11.81□□□□□ -0.52
CXCL1P09341 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC11.81□□□□□ -0.52
CXCL1P09341 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
CXCL1P09341 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC11.81□□□□□ -0.52
CXCL1P09341 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC11.81□□□□□ -0.52
CXCL1P09341 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC11.81□□□□□ -0.52
CXCL1P09341 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
CXCL1P09341 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC11.81□□□□□ -0.52
CXCL1P09341 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC11.81□□□□□ -0.52
CXCL1P09341 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC11.81□□□□□ -0.52
CXCL1P09341 CXCL1P1-201ENST00000502804 216 ntBASIC11.81□□□□□ -0.52
CXCL1P09341 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC11.81□□□□□ -0.52
CXCL1P09341 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC11.81□□□□□ -0.52
CXCL1P09341 AC002347.1-201ENST00000569543 541 ntBASIC11.81□□□□□ -0.52
CXCL1P09341 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC11.81□□□□□ -0.52
CXCL1P09341 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC11.81□□□□□ -0.52
CXCL1P09341 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC11.81□□□□□ -0.52
CXCL1P09341 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
CXCL1P09341 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
CXCL1P09341 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC11.81□□□□□ -0.52
CXCL1P09341 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
CXCL1P09341 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC11.81□□□□□ -0.52
CXCL1P09341 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC11.81□□□□□ -0.52
CXCL1P09341 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
CXCL1P09341 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC11.81□□□□□ -0.52
CXCL1P09341 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 AL589702.1-201ENST00000641229 1509 ntBASIC11.81□□□□□ -0.52
CXCL1P09341 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 FUK-202ENST00000378912 3925 ntTSL 2 BASIC11.8□□□□□ -0.52
CXCL1P09341 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC11.8□□□□□ -0.52
CXCL1P09341 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC11.8□□□□□ -0.52
CXCL1P09341 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC11.8□□□□□ -0.52
CXCL1P09341 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
CXCL1P09341 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC11.8□□□□□ -0.52
CXCL1P09341 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
CXCL1P09341 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
CXCL1P09341 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC11.8□□□□□ -0.52
CXCL1P09341 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC11.8□□□□□ -0.52
CXCL1P09341 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
CXCL1P09341 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 PRSS29P-201ENST00000440800 595 ntBASIC11.8□□□□□ -0.52
CXCL1P09341 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC11.8□□□□□ -0.52
CXCL1P09341 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC11.8□□□□□ -0.52
CXCL1P09341 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC11.8□□□□□ -0.52
CXCL1P09341 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC11.8□□□□□ -0.52
CXCL1P09341 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 OR7E47P-204ENST00000575924 449 ntBASIC11.8□□□□□ -0.52
CXCL1P09341 CYB561-216ENST00000582297 897 ntTSL 3 BASIC11.8□□□□□ -0.52
CXCL1P09341 AC011467.4-201ENST00000594891 528 ntBASIC11.8□□□□□ -0.52
CXCL1P09341 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC11.8□□□□□ -0.52
CXCL1P09341 AC008735.5-201ENST00000623544 497 ntBASIC11.8□□□□□ -0.52
CXCL1P09341 AC005593.1-201ENST00000624894 515 ntBASIC11.8□□□□□ -0.52
CXCL1P09341 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC11.8□□□□□ -0.52
CXCL1P09341 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC11.8□□□□□ -0.52
CXCL1P09341 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC11.8□□□□□ -0.52
CXCL1P09341 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
CXCL1P09341 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CXCL1P09341 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC11.8□□□□□ -0.52
CXCL1P09341 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC11.8□□□□□ -0.52
CXCL1P09341 DNM1P41-201ENST00000623634 3350 ntBASIC11.8□□□□□ -0.52
CXCL1P09341 INE2-201ENST00000630399 1874 ntBASIC11.8□□□□□ -0.52
CXCL1P09341 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
CXCL1P09341 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
CXCL1P09341 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms