Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
COL4A1P02462 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A1P02462 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A1P02462 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A1P02462 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC18.08■□□□□ 0.48
COL4A1P02462 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
COL4A1P02462 RN7SL258P-201ENST00000478664 300 ntBASIC18.08■□□□□ 0.48
COL4A1P02462 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC18.08■□□□□ 0.48
COL4A1P02462 AC005618.3-201ENST00000624928 458 ntBASIC18.08■□□□□ 0.48
COL4A1P02462 AC009145.4-201ENST00000625119 1294 ntBASIC18.08■□□□□ 0.48
COL4A1P02462 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC18.08■□□□□ 0.48
COL4A1P02462 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A1P02462 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
COL4A1P02462 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC18.08■□□□□ 0.48
COL4A1P02462 GSN-215ENST00000545652 2428 ntTSL 2 BASIC18.08■□□□□ 0.48
COL4A1P02462 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.08■□□□□ 0.48
COL4A1P02462 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.08■□□□□ 0.48
COL4A1P02462 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A1P02462 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A1P02462 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A1P02462 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
COL4A1P02462 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC18.07■□□□□ 0.48
COL4A1P02462 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
COL4A1P02462 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 RPL13AP19-201ENST00000434320 584 ntBASIC18.07■□□□□ 0.48
COL4A1P02462 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC18.07■□□□□ 0.48
COL4A1P02462 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A1P02462 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC18.07■□□□□ 0.48
COL4A1P02462 IGHVIII-5-2-201ENST00000522505 261 ntBASIC18.07■□□□□ 0.48
COL4A1P02462 MBP-227ENST00000526111 581 ntTSL 4 BASIC18.07■□□□□ 0.48
COL4A1P02462 NEU3-207ENST00000534628 746 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A1P02462 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 AC135983.4-201ENST00000564116 1262 ntBASIC18.07■□□□□ 0.48
COL4A1P02462 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC18.07■□□□□ 0.48
COL4A1P02462 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC18.07■□□□□ 0.48
COL4A1P02462 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC18.07■□□□□ 0.48
COL4A1P02462 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC18.07■□□□□ 0.48
COL4A1P02462 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 AC025262.2-201ENST00000623975 1056 ntBASIC18.07■□□□□ 0.48
COL4A1P02462 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
COL4A1P02462 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A1P02462 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 CICP6-201ENST00000457191 2729 ntBASIC18.07■□□□□ 0.48
COL4A1P02462 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
COL4A1P02462 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
COL4A1P02462 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A1P02462 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
COL4A1P02462 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A1P02462 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A1P02462 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A1P02462 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A1P02462 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A1P02462 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A1P02462 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A1P02462 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A1P02462 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A1P02462 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC18.06■□□□□ 0.48
COL4A1P02462 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
COL4A1P02462 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A1P02462 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A1P02462 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A1P02462 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A1P02462 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
COL4A1P02462 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A1P02462 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A1P02462 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A1P02462 STK26-204ENST00000481105 1835 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A1P02462 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
COL4A1P02462 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A1P02462 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A1P02462 MECR-202ENST00000373791 2416 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A1P02462 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A1P02462 LINC00554-201ENST00000564841 3011 ntBASIC18.06■□□□□ 0.48
COL4A1P02462 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A1P02462 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A1P02462 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC18.06■□□□□ 0.48
COL4A1P02462 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A1P02462 ST13P19-201ENST00000442505 1124 ntBASIC18.06■□□□□ 0.48
COL4A1P02462 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A1P02462 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A1P02462 CTBP2P4-201ENST00000513884 920 ntBASIC18.06■□□□□ 0.48
COL4A1P02462 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A1P02462 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC18.06■□□□□ 0.48
COL4A1P02462 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms