Protein–RNA interactions for Protein: O43734

TRAF3IP2, Adapter protein CIKS, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3IP2O43734 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TRAF3IP2O43734 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.54□□□□□ -0.24
TRAF3IP2O43734 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TRAF3IP2O43734 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.54□□□□□ -0.24
TRAF3IP2O43734 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
TRAF3IP2O43734 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TRAF3IP2O43734 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TRAF3IP2O43734 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 ACKR1-201ENST00000368121 1240 ntBASIC13.53□□□□□ -0.24
TRAF3IP2O43734 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 AC114812.1-204ENST00000449669 728 ntBASIC13.53□□□□□ -0.24
TRAF3IP2O43734 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 DUX4L47-201ENST00000566374 394 ntBASIC13.53□□□□□ -0.24
TRAF3IP2O43734 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 AC025048.6-201ENST00000634326 1161 ntBASIC13.53□□□□□ -0.24
TRAF3IP2O43734 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
TRAF3IP2O43734 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
TRAF3IP2O43734 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
TRAF3IP2O43734 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.52□□□□□ -0.24
TRAF3IP2O43734 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
TRAF3IP2O43734 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
TRAF3IP2O43734 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.52□□□□□ -0.24
TRAF3IP2O43734 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
TRAF3IP2O43734 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
TRAF3IP2O43734 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
TRAF3IP2O43734 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.52□□□□□ -0.24
TRAF3IP2O43734 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
TRAF3IP2O43734 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC13.52□□□□□ -0.24
TRAF3IP2O43734 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
TRAF3IP2O43734 RPS15-201ENST00000233609 534 ntTSL 2 BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 PGGT1BP2-201ENST00000398621 1028 ntBASIC13.52□□□□□ -0.25
TRAF3IP2O43734 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 AP006294.1-201ENST00000415407 339 ntBASIC13.52□□□□□ -0.25
TRAF3IP2O43734 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 AC022137.2-201ENST00000503482 481 ntBASIC13.52□□□□□ -0.25
TRAF3IP2O43734 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 RPS15-205ENST00000586686 562 ntTSL 5 BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 RPS15-208ENST00000591804 711 ntTSL 5 BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.52□□□□□ -0.25
TRAF3IP2O43734 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms