Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 AC013726.1-201ENST00000563747 2285 ntBASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A3BPQ9Y5P4 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 AC007551.1-201ENST00000457394 519 ntBASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 NAA38-206ENST00000576384 424 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 GNRHR2-203ENST00000581100 1187 ntBASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 CICP23-201ENST00000605013 2741 ntBASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 AL513477.1-201ENST00000602865 2407 ntBASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A3BPQ9Y5P4 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 AL360270.3-201ENST00000609118 1348 ntBASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 AL158070.2-201ENST00000623713 1621 ntBASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 RNU1-114P-201ENST00000365297 166 ntBASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 AC016694.1-201ENST00000434179 700 ntBASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
COL4A3BPQ9Y5P4 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms