Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.55□□□□□ -0.08
PCDHGA1Q9Y5H4 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDHGA1Q9Y5H4 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDHGA1Q9Y5H4 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDHGA1Q9Y5H4 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PCDHGA1Q9Y5H4 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PCDHGA1Q9Y5H4 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PCDHGA1Q9Y5H4 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 RPL5P21-201ENST00000404620 815 ntBASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 AC104784.1-201ENST00000473096 294 ntBASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 AC019193.1-201ENST00000506678 823 ntBASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 CFL1-214ENST00000534769 758 ntTSL 2 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 IQSEC3P1-201ENST00000538799 536 ntBASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 AC020922.3-201ENST00000595064 547 ntBASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 AP000346.4-201ENST00000614827 381 ntBASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 AL136301.1-201ENST00000615830 422 ntBASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 AC006453.1-201ENST00000636037 1257 ntBASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 AC069224.1-201ENST00000566372 1715 ntBASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PCDHGA1Q9Y5H4 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 FKBP4P6-201ENST00000457486 1332 ntBASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 RN7SKP214-201ENST00000364208 315 ntBASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 AC026316.1-201ENST00000398900 414 ntBASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 AC069218.1-201ENST00000435269 762 ntBASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 AC009955.4-201ENST00000597192 544 ntBASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 AL132994.2-201ENST00000603120 687 ntBASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.53□□□□□ -0.08
PCDHGA1Q9Y5H4 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms