Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 THY1-209ENST00000580275 578 ntTSL 3 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 AC004686.1-201ENST00000605113 538 ntBASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 Z98259.2-201ENST00000641583 609 ntBASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 AL118508.1-201ENST00000613502 2345 ntBASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 HLA-DMA-203ENST00000395305 777 ntBASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 TSPY25P-201ENST00000429463 745 ntBASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 AL135901.1-201ENST00000451812 333 ntBASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 AC008825.2-201ENST00000603374 718 ntBASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 AC005041.3-201ENST00000606287 649 ntBASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.8■□□□□ 0.44
SMC1BQ8NDV3 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 MT3-203ENST00000565838 421 ntTSL 3 BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 AC022188.1-201ENST00000620960 1664 ntBASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.79■□□□□ 0.44
SMC1BQ8NDV3 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 CTSL-202ENST00000342020 933 ntTSL 2 BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMC1BQ8NDV3 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms