Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 KRT8P13-201ENST00000463294 1010 ntBASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 APOA2-204ENST00000464492 530 ntTSL 3 BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 OARD1-212ENST00000482515 832 ntTSL 2 BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 AP001258.2-201ENST00000529891 490 ntBASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 LINC00554-201ENST00000564841 3011 ntBASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 AC046158.3-201ENST00000624947 2558 ntBASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
UBE3BQ7Z3V4 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 AC011270.2-201ENST00000624293 2550 ntBASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 HNRNPA1P63-201ENST00000427917 963 ntBASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 KLK11-210ENST00000600362 759 ntTSL 3 BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 PCDHGB8P-201ENST00000502926 1973 ntBASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBE3BQ7Z3V4 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 AL133338.1-201ENST00000565695 1517 ntBASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 AL138725.1-201ENST00000407347 1314 ntBASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 AGER-203ENST00000375065 665 ntTSL 2 BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 NDUFAB1P1-201ENST00000404262 460 ntBASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 POM121L10P-201ENST00000436994 1285 ntBASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 AC103810.3-201ENST00000583567 96 ntBASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 AC002472.3-201ENST00000640124 621 ntBASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC18.79■□□□□ 0.6
UBE3BQ7Z3V4 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms