Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 AP3S2-216ENST00000617003 1561 ntBASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 AC142381.1-201ENST00000426099 345 ntBASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 SPDYE14P-201ENST00000442619 822 ntBASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 AC243562.2-201ENST00000561247 970 ntBASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 RARRES2P9-201ENST00000565168 469 ntBASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 PEG13-201ENST00000631594 5667 ntBASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 TUBB3P1-201ENST00000405796 1332 ntBASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 CEP85L-203ENST00000368491 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PPP4R4Q6NUP7 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.07
PPP4R4Q6NUP7 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.65□□□□□ -0.07
PPP4R4Q6NUP7 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
PPP4R4Q6NUP7 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
PPP4R4Q6NUP7 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 BNIP3P1-202ENST00000550043 1585 ntBASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 AL353705.2-201ENST00000428243 662 ntBASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 MTND6P24-201ENST00000440466 518 ntBASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 RFPL4AP1-201ENST00000530883 850 ntBASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms