Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HOXA1P49639 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
HOXA1P49639 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
HOXA1P49639 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
HOXA1P49639 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HOXA1P49639 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HOXA1P49639 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC12.72□□□□□ -0.37
HOXA1P49639 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HOXA1P49639 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
HOXA1P49639 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HOXA1P49639 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
HOXA1P49639 AC126365.1-201ENST00000578585 1514 ntBASIC12.72□□□□□ -0.37
HOXA1P49639 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC12.72□□□□□ -0.37
HOXA1P49639 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
HOXA1P49639 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC12.72□□□□□ -0.37
HOXA1P49639 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC12.72□□□□□ -0.37
HOXA1P49639 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HOXA1P49639 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
HOXA1P49639 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
HOXA1P49639 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC12.71□□□□□ -0.37
HOXA1P49639 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
HOXA1P49639 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 TCAF2-201ENST00000357344 2958 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
HOXA1P49639 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
HOXA1P49639 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 AC019294.4-201ENST00000561777 2905 ntBASIC12.71□□□□□ -0.37
HOXA1P49639 RAB37-202ENST00000392610 2858 ntTSL 3 BASIC12.71□□□□□ -0.37
HOXA1P49639 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
HOXA1P49639 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC12.71□□□□□ -0.37
HOXA1P49639 AC004987.2-201ENST00000395959 1148 ntBASIC12.71□□□□□ -0.37
HOXA1P49639 CBR1-202ENST00000399191 838 ntTSL 3 BASIC12.71□□□□□ -0.37
HOXA1P49639 RAC2-202ENST00000401529 569 ntTSL 4 BASIC12.71□□□□□ -0.37
HOXA1P49639 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
HOXA1P49639 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC12.71□□□□□ -0.37
HOXA1P49639 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC12.71□□□□□ -0.37
HOXA1P49639 AL450487.1-201ENST00000426799 995 ntBASIC12.71□□□□□ -0.37
HOXA1P49639 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC12.71□□□□□ -0.37
HOXA1P49639 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC12.71□□□□□ -0.37
HOXA1P49639 PENK-208ENST00000523051 772 ntTSL 5 BASIC12.71□□□□□ -0.37
HOXA1P49639 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC12.71□□□□□ -0.37
HOXA1P49639 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC12.71□□□□□ -0.37
HOXA1P49639 PDPK2P-202ENST00000562415 1191 ntBASIC12.71□□□□□ -0.37
HOXA1P49639 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC12.71□□□□□ -0.37
HOXA1P49639 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC12.71□□□□□ -0.37
HOXA1P49639 AC061975.2-201ENST00000581722 295 ntBASIC12.71□□□□□ -0.37
HOXA1P49639 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 AC073389.1-201ENST00000595595 795 ntBASIC12.71□□□□□ -0.37
HOXA1P49639 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC12.71□□□□□ -0.37
HOXA1P49639 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC12.71□□□□□ -0.37
HOXA1P49639 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC12.71□□□□□ -0.37
HOXA1P49639 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 NOX5-202ENST00000388866 2804 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
HOXA1P49639 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
HOXA1P49639 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
HOXA1P49639 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HOXA1P49639 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC12.71□□□□□ -0.38
HOXA1P49639 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
HOXA1P49639 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HOXA1P49639 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
HOXA1P49639 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC12.71□□□□□ -0.38
HOXA1P49639 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HOXA1P49639 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
HOXA1P49639 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC12.71□□□□□ -0.38
HOXA1P49639 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HOXA1P49639 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
HOXA1P49639 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
HOXA1P49639 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HOXA1P49639 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC12.71□□□□□ -0.38
HOXA1P49639 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HOXA1P49639 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 LSS-211ENST00000522411 2523 ntTSL 2 BASIC12.7□□□□□ -0.38
HOXA1P49639 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC12.7□□□□□ -0.38
HOXA1P49639 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
HOXA1P49639 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 BEND3P3-201ENST00000611030 2440 ntBASIC12.7□□□□□ -0.38
HOXA1P49639 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXA1P49639 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC12.7□□□□□ -0.38
HOXA1P49639 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC12.7□□□□□ -0.38
HOXA1P49639 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms