Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
RFX3P48380 CLK3P2-201ENST00000427566 1453 ntBASIC14.37□□□□□ -0.11
RFX3P48380 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
RFX3P48380 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX3P48380 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.37□□□□□ -0.11
RFX3P48380 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
RFX3P48380 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
RFX3P48380 KRT8P44-201ENST00000441609 1350 ntBASIC14.36□□□□□ -0.11
RFX3P48380 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
RFX3P48380 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
RFX3P48380 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.36□□□□□ -0.11
RFX3P48380 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.36□□□□□ -0.11
RFX3P48380 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
RFX3P48380 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
RFX3P48380 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.36□□□□□ -0.11
RFX3P48380 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 RPL5P21-201ENST00000404620 815 ntBASIC14.36□□□□□ -0.11
RFX3P48380 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.36□□□□□ -0.11
RFX3P48380 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.36□□□□□ -0.11
RFX3P48380 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.36□□□□□ -0.11
RFX3P48380 SERBP1P5-201ENST00000510079 1181 ntBASIC14.36□□□□□ -0.11
RFX3P48380 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.36□□□□□ -0.11
RFX3P48380 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.36□□□□□ -0.11
RFX3P48380 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.36□□□□□ -0.11
RFX3P48380 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.36□□□□□ -0.11
RFX3P48380 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.36□□□□□ -0.11
RFX3P48380 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.36□□□□□ -0.11
RFX3P48380 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.36□□□□□ -0.11
RFX3P48380 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.36□□□□□ -0.11
RFX3P48380 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.36□□□□□ -0.11
RFX3P48380 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 AC009118.2-201ENST00000613275 655 ntBASIC14.36□□□□□ -0.11
RFX3P48380 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
RFX3P48380 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
RFX3P48380 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
RFX3P48380 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
RFX3P48380 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.36□□□□□ -0.11
RFX3P48380 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
RFX3P48380 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
RFX3P48380 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.36□□□□□ -0.11
RFX3P48380 AC126365.1-201ENST00000578585 1514 ntBASIC14.36□□□□□ -0.11
RFX3P48380 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX3P48380 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.35□□□□□ -0.11
RFX3P48380 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.35□□□□□ -0.11
RFX3P48380 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
RFX3P48380 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.35□□□□□ -0.11
RFX3P48380 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.35□□□□□ -0.11
RFX3P48380 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.35□□□□□ -0.11
RFX3P48380 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.35□□□□□ -0.11
RFX3P48380 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.35□□□□□ -0.11
RFX3P48380 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.35□□□□□ -0.11
RFX3P48380 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.35□□□□□ -0.11
RFX3P48380 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.35□□□□□ -0.11
RFX3P48380 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.35□□□□□ -0.11
RFX3P48380 BCRP1-201ENST00000444246 691 ntBASIC14.35□□□□□ -0.11
RFX3P48380 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.35□□□□□ -0.11
RFX3P48380 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.35□□□□□ -0.11
RFX3P48380 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.35□□□□□ -0.11
RFX3P48380 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.35□□□□□ -0.11
RFX3P48380 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.35□□□□□ -0.11
RFX3P48380 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.35□□□□□ -0.11
RFX3P48380 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX3P48380 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
RFX3P48380 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms