Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC123567.1-201ENST00000548294 1261 ntBASIC14.8□□□□□ -0.04
HNF4AP41235 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.8□□□□□ -0.04
HNF4AP41235 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.8□□□□□ -0.04
HNF4AP41235 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.8□□□□□ -0.04
HNF4AP41235 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.8□□□□□ -0.04
HNF4AP41235 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 AC007431.3-201ENST00000623221 587 ntBASIC14.8□□□□□ -0.04
HNF4AP41235 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
HNF4AP41235 DRD5P1-201ENST00000456605 1438 ntBASIC14.8□□□□□ -0.04
HNF4AP41235 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.8□□□□□ -0.04
HNF4AP41235 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.8□□□□□ -0.04
HNF4AP41235 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.8□□□□□ -0.04
HNF4AP41235 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.8□□□□□ -0.04
HNF4AP41235 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.8□□□□□ -0.04
HNF4AP41235 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
HNF4AP41235 AL359258.3-201ENST00000622910 2331 ntBASIC14.8□□□□□ -0.04
HNF4AP41235 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HNF4AP41235 CICP23-201ENST00000605013 2741 ntBASIC14.79□□□□□ -0.04
HNF4AP41235 CICP24-201ENST00000605464 2705 ntBASIC14.79□□□□□ -0.04
HNF4AP41235 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
HNF4AP41235 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
HNF4AP41235 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.79□□□□□ -0.04
HNF4AP41235 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.79□□□□□ -0.04
HNF4AP41235 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.79□□□□□ -0.04
HNF4AP41235 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.79□□□□□ -0.04
HNF4AP41235 PIN1P1-201ENST00000412108 996 ntBASIC14.79□□□□□ -0.04
HNF4AP41235 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.79□□□□□ -0.04
HNF4AP41235 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.79□□□□□ -0.04
HNF4AP41235 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
HNF4AP41235 AC104596.2-201ENST00000512793 793 ntBASIC14.79□□□□□ -0.04
HNF4AP41235 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.79□□□□□ -0.04
HNF4AP41235 AC026410.3-201ENST00000514280 936 ntBASIC14.79□□□□□ -0.04
HNF4AP41235 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.79□□□□□ -0.04
HNF4AP41235 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.79□□□□□ -0.04
HNF4AP41235 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.79□□□□□ -0.04
HNF4AP41235 AC190387.1-201ENST00000551683 408 ntBASIC14.79□□□□□ -0.04
HNF4AP41235 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.79□□□□□ -0.04
HNF4AP41235 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.79□□□□□ -0.04
HNF4AP41235 AC138761.1-201ENST00000584393 385 ntBASIC14.79□□□□□ -0.04
HNF4AP41235 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
HNF4AP41235 AC008494.3-201ENST00000606615 944 ntBASIC14.79□□□□□ -0.04
HNF4AP41235 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.79□□□□□ -0.04
HNF4AP41235 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 AC104581.4-201ENST00000623126 3052 ntBASIC14.79□□□□□ -0.04
HNF4AP41235 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
HNF4AP41235 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HNF4AP41235 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
HNF4AP41235 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
HNF4AP41235 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.79□□□□□ -0.04
HNF4AP41235 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HNF4AP41235 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
HNF4AP41235 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
HNF4AP41235 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.78□□□□□ -0.04
HNF4AP41235 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.78□□□□□ -0.04
HNF4AP41235 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.78□□□□□ -0.04
HNF4AP41235 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HNF4AP41235 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 AC007787.1-201ENST00000588095 1583 ntBASIC14.78□□□□□ -0.04
HNF4AP41235 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.78□□□□□ -0.04
HNF4AP41235 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms