Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC17.03■□□□□ 0.32
CIITAP33076 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
CIITAP33076 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.03■□□□□ 0.32
CIITAP33076 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC17.03■□□□□ 0.32
CIITAP33076 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CIITAP33076 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17.02■□□□□ 0.32
CIITAP33076 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
CIITAP33076 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.02■□□□□ 0.32
CIITAP33076 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC17.02■□□□□ 0.32
CIITAP33076 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CIITAP33076 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.02■□□□□ 0.32
CIITAP33076 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CIITAP33076 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CIITAP33076 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CIITAP33076 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CIITAP33076 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CIITAP33076 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CIITAP33076 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CIITAP33076 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CIITAP33076 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CIITAP33076 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CIITAP33076 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC17.02■□□□□ 0.32
CIITAP33076 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.02■□□□□ 0.32
CIITAP33076 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CIITAP33076 YBX1P6-201ENST00000442962 1002 ntBASIC17.02■□□□□ 0.32
CIITAP33076 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CIITAP33076 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC17.02■□□□□ 0.32
CIITAP33076 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC17.02■□□□□ 0.32
CIITAP33076 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC17.02■□□□□ 0.32
CIITAP33076 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC17.02■□□□□ 0.32
CIITAP33076 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CIITAP33076 OR10B1P-201ENST00000601666 907 ntBASIC17.02■□□□□ 0.32
CIITAP33076 AC073413.1-201ENST00000603927 732 ntBASIC17.02■□□□□ 0.32
CIITAP33076 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.02■□□□□ 0.32
CIITAP33076 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CIITAP33076 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CIITAP33076 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CIITAP33076 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
CIITAP33076 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CIITAP33076 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CIITAP33076 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CIITAP33076 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC17.02■□□□□ 0.31
CIITAP33076 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC17.01■□□□□ 0.31
CIITAP33076 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC17.01■□□□□ 0.31
CIITAP33076 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC17.01■□□□□ 0.31
CIITAP33076 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
CIITAP33076 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC17.01■□□□□ 0.31
CIITAP33076 FLJ16779-201ENST00000612722 7638 ntBASIC17.01■□□□□ 0.31
CIITAP33076 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.01■□□□□ 0.31
CIITAP33076 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 RN7SKP175-201ENST00000408472 289 ntBASIC17.01■□□□□ 0.31
CIITAP33076 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CIITAP33076 RGS5-214ENST00000429865 754 ntTSL 3 BASIC17.01■□□□□ 0.31
CIITAP33076 COX5BP1-201ENST00000507622 393 ntBASIC17.01■□□□□ 0.31
CIITAP33076 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.01■□□□□ 0.31
CIITAP33076 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC17.01■□□□□ 0.31
CIITAP33076 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CIITAP33076 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 INE2-201ENST00000630399 1874 ntBASIC17.01■□□□□ 0.31
CIITAP33076 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CIITAP33076 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CIITAP33076 AC011840.2-201ENST00000563063 1520 ntBASIC17.01■□□□□ 0.31
CIITAP33076 AJ011931.1-201ENST00000618749 2492 ntBASIC17.01■□□□□ 0.31
CIITAP33076 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17■□□□□ 0.31
CIITAP33076 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17■□□□□ 0.31
CIITAP33076 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC17■□□□□ 0.31
CIITAP33076 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms