Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SLC28A1O00337 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
SLC28A1O00337 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
SLC28A1O00337 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.66□□□□□ -0.06
SLC28A1O00337 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.66□□□□□ -0.06
SLC28A1O00337 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
SLC28A1O00337 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
SLC28A1O00337 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SLC28A1O00337 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.66□□□□□ -0.06
SLC28A1O00337 AL645937.2-201ENST00000396808 931 ntBASIC14.66□□□□□ -0.06
SLC28A1O00337 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.66□□□□□ -0.06
SLC28A1O00337 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SLC28A1O00337 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.66□□□□□ -0.06
SLC28A1O00337 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.66□□□□□ -0.06
SLC28A1O00337 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.66□□□□□ -0.06
SLC28A1O00337 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
SLC28A1O00337 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SLC28A1O00337 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.66□□□□□ -0.06
SLC28A1O00337 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.66□□□□□ -0.06
SLC28A1O00337 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SLC28A1O00337 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.66□□□□□ -0.06
SLC28A1O00337 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SLC28A1O00337 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SLC28A1O00337 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SLC28A1O00337 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SLC28A1O00337 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.66□□□□□ -0.06
SLC28A1O00337 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SLC28A1O00337 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.66□□□□□ -0.06
SLC28A1O00337 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.66□□□□□ -0.06
SLC28A1O00337 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
SLC28A1O00337 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
SLC28A1O00337 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SLC28A1O00337 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SLC28A1O00337 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SLC28A1O00337 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.65□□□□□ -0.06
SLC28A1O00337 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
SLC28A1O00337 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
SLC28A1O00337 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.65□□□□□ -0.06
SLC28A1O00337 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 TSSK5P-201ENST00000423978 907 ntBASIC14.65□□□□□ -0.06
SLC28A1O00337 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.65□□□□□ -0.06
SLC28A1O00337 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.65□□□□□ -0.06
SLC28A1O00337 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.65□□□□□ -0.06
SLC28A1O00337 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
SLC28A1O00337 SRD5A3P1-201ENST00000603021 949 ntBASIC14.65□□□□□ -0.06
SLC28A1O00337 AL391069.4-201ENST00000609583 481 ntBASIC14.65□□□□□ -0.06
SLC28A1O00337 AC093028.1-201ENST00000622998 982 ntBASIC14.65□□□□□ -0.06
SLC28A1O00337 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.65□□□□□ -0.06
SLC28A1O00337 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
SLC28A1O00337 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
SLC28A1O00337 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.65□□□□□ -0.06
SLC28A1O00337 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.65□□□□□ -0.06
SLC28A1O00337 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.65□□□□□ -0.06
SLC28A1O00337 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.65□□□□□ -0.06
SLC28A1O00337 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.65□□□□□ -0.06
SLC28A1O00337 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.65□□□□□ -0.06
SLC28A1O00337 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.65□□□□□ -0.06
SLC28A1O00337 AC093525.8-201ENST00000624099 1342 ntBASIC14.65□□□□□ -0.06
SLC28A1O00337 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SLC28A1O00337 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.64□□□□□ -0.07
SLC28A1O00337 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
SLC28A1O00337 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 CLK3P2-201ENST00000427566 1453 ntBASIC14.64□□□□□ -0.07
SLC28A1O00337 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
SLC28A1O00337 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.64□□□□□ -0.07
SLC28A1O00337 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
SLC28A1O00337 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
SLC28A1O00337 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SLC28A1O00337 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms