Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 OS9-204ENST00000389146 2091 ntTSL 2 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 MARS-233ENST00000628866 2583 ntTSL 5 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 MIR770-201ENST00000390219 98 ntBASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 INGX-202ENST00000489074 768 ntBASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 REEP4-207ENST00000523293 913 ntTSL 3 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 TBCB-211ENST00000589996 724 ntTSL 3 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 AL158212.4-201ENST00000624062 1286 ntBASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 RERG-209ENST00000546331 1383 ntTSL 2 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
HLA-DRB4X5D2U9 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 OS9-207ENST00000439210 1946 ntTSL 2 BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 TP73-209ENST00000603362 1668 ntTSL 5 BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 AC087386.2-201ENST00000623212 4637 ntBASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DRB4X5D2U9 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 MRPS18AP1-201ENST00000414458 589 ntBASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 SPDYE18-201ENST00000510091 1050 ntBASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 FTH1-202ENST00000526640 786 ntTSL 2 BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 AC036164.1-201ENST00000570544 333 ntBASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 ARL16-202ENST00000570561 768 ntTSL 2 BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC11.52□□□□□ -0.57
HLA-DRB4X5D2U9 RNA5-8SN1-201ENST00000610460 153 ntBASIC11.52□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms