Protein–RNA interactions for Protein: Q9Y2P8

RCL1, RNA 3'-terminal phosphate cyclase-like protein, humanhuman

Known RBP Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RCL1Q9Y2P8 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
RCL1Q9Y2P8 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 PP14571-201ENST00000404327 934 ntTSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 SPIB-207ENST00000597855 564 ntTSL 4 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 AC148477.8-201ENST00000624298 468 ntBASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 AC007787.1-201ENST00000588095 1583 ntBASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 RET-205ENST00000615310 4337 ntTSL 5 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
RCL1Q9Y2P8 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 BCAR1-209ENST00000546196 1340 ntBASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RCL1Q9Y2P8 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms