Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 LINC02560-201ENST00000596379 459 ntBASIC18.19■□□□□ 0.5
RNF20Q5VTR2 TMEM261P1-201ENST00000604899 340 ntBASIC18.19■□□□□ 0.5
RNF20Q5VTR2 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 CICP14-201ENST00000629111 2732 ntBASIC18.19■□□□□ 0.5
RNF20Q5VTR2 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF20Q5VTR2 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 REXO1L5P-201ENST00000622260 2098 ntBASIC18.18■□□□□ 0.5
RNF20Q5VTR2 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 KRT8P22-201ENST00000562317 1415 ntBASIC18.18■□□□□ 0.5
RNF20Q5VTR2 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 HLA-K-203ENST00000430151 1046 ntBASIC18.18■□□□□ 0.5
RNF20Q5VTR2 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 SPCS2P1-201ENST00000561636 679 ntBASIC18.18■□□□□ 0.5
RNF20Q5VTR2 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 AC008761.3-201ENST00000624803 892 ntBASIC18.18■□□□□ 0.5
RNF20Q5VTR2 PRSS30P-206ENST00000641773 873 ntBASIC18.18■□□□□ 0.5
RNF20Q5VTR2 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 SF1-209ENST00000433274 2317 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
RNF20Q5VTR2 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 AC124283.3-201ENST00000570869 594 ntBASIC18.17■□□□□ 0.5
RNF20Q5VTR2 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 AC133539.2-201ENST00000604757 467 ntBASIC18.17■□□□□ 0.5
RNF20Q5VTR2 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF20Q5VTR2 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms