Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 PPT1-215ENST00000641471 2368 ntBASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 RPL18P13-201ENST00000478088 569 ntBASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 AC004923.1-202ENST00000642106 209 ntBASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SHROOM1Q2M3G4 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 AC010141.1-201ENST00000411585 623 ntBASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 FOS-206ENST00000555347 1280 ntTSL 2 BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 AL160314.3-201ENST00000556041 767 ntBASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 AC013355.1-201ENST00000562625 723 ntBASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 FGFR3P5-201ENST00000564496 886 ntBASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 AC005324.6-201ENST00000587972 613 ntBASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 AL133499.1-201ENST00000596207 608 ntBASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHROOM1Q2M3G4 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 HLA-DPB2-205ENST00000435074 1188 ntBASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 AC100827.2-201ENST00000563214 1194 ntBASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 AC091812.3-201ENST00000621362 345 ntBASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 KRT8P19-201ENST00000551916 1455 ntBASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 AC244394.1-201ENST00000435000 1665 ntBASIC17.54■□□□□ 0.4
SHROOM1Q2M3G4 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms