Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH13P55290 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH13P55290 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
CDH13P55290 AL157414.3-201ENST00000624276 1954 ntBASIC14.94□□□□□ -0.02
CDH13P55290 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.94□□□□□ -0.02
CDH13P55290 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.94□□□□□ -0.02
CDH13P55290 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH13P55290 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CDH13P55290 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH13P55290 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH13P55290 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.94□□□□□ -0.02
CDH13P55290 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CDH13P55290 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
CDH13P55290 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
CDH13P55290 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CDH13P55290 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.94□□□□□ -0.02
CDH13P55290 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.02
CDH13P55290 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CDH13P55290 AC007787.1-201ENST00000588095 1583 ntBASIC14.94□□□□□ -0.02
CDH13P55290 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.93□□□□□ -0.02
CDH13P55290 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.93□□□□□ -0.02
CDH13P55290 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
CDH13P55290 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
CDH13P55290 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.93□□□□□ -0.02
CDH13P55290 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CDH13P55290 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
CDH13P55290 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.93□□□□□ -0.02
CDH13P55290 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
CDH13P55290 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.93□□□□□ -0.02
CDH13P55290 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.93□□□□□ -0.02
CDH13P55290 TIMM17BP1-201ENST00000545713 516 ntBASIC14.93□□□□□ -0.02
CDH13P55290 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.93□□□□□ -0.02
CDH13P55290 AC015911.4-201ENST00000588022 1070 ntBASIC14.93□□□□□ -0.02
CDH13P55290 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CDH13P55290 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 LILRP1-201ENST00000444199 1370 ntBASIC14.93□□□□□ -0.02
CDH13P55290 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.93□□□□□ -0.02
CDH13P55290 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.93□□□□□ -0.02
CDH13P55290 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.93□□□□□ -0.02
CDH13P55290 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
CDH13P55290 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.93□□□□□ -0.02
CDH13P55290 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 AP001267.2-201ENST00000532619 2086 ntBASIC14.93□□□□□ -0.02
CDH13P55290 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDH13P55290 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
CDH13P55290 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
CDH13P55290 AC113367.3-201ENST00000508316 1912 ntBASIC14.92□□□□□ -0.02
CDH13P55290 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.92□□□□□ -0.02
CDH13P55290 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.92□□□□□ -0.02
CDH13P55290 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.92□□□□□ -0.02
CDH13P55290 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.92□□□□□ -0.02
CDH13P55290 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.92□□□□□ -0.02
CDH13P55290 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.92□□□□□ -0.02
CDH13P55290 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.92□□□□□ -0.02
CDH13P55290 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.92□□□□□ -0.02
CDH13P55290 AC079781.4-201ENST00000641908 219 ntBASIC14.92□□□□□ -0.02
CDH13P55290 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
CDH13P55290 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDH13P55290 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.92□□□□□ -0.02
CDH13P55290 BX640514.1-201ENST00000583223 1918 ntBASIC14.92□□□□□ -0.02
CDH13P55290 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms