Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AC093813.1-201ENST00000605066 256 ntBASIC15.86■□□□□ 0.13
CDH6P55285 AC004233.3-201ENST00000607794 1269 ntBASIC15.86■□□□□ 0.13
CDH6P55285 AC093726.1-201ENST00000608064 963 ntBASIC15.86■□□□□ 0.13
CDH6P55285 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.86■□□□□ 0.13
CDH6P55285 AC008761.3-201ENST00000624803 892 ntBASIC15.86■□□□□ 0.13
CDH6P55285 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.86■□□□□ 0.13
CDH6P55285 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.86■□□□□ 0.13
CDH6P55285 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.86■□□□□ 0.13
CDH6P55285 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.86■□□□□ 0.13
CDH6P55285 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
CDH6P55285 AL391825.1-201ENST00000457671 1364 ntBASIC15.86■□□□□ 0.13
CDH6P55285 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDH6P55285 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.86■□□□□ 0.13
CDH6P55285 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.85■□□□□ 0.13
CDH6P55285 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.85■□□□□ 0.13
CDH6P55285 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.85■□□□□ 0.13
CDH6P55285 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.85■□□□□ 0.13
CDH6P55285 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
CDH6P55285 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
CDH6P55285 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 AC134915.1-201ENST00000426461 574 ntBASIC15.85■□□□□ 0.13
CDH6P55285 AC002472.2-201ENST00000442739 958 ntBASIC15.85■□□□□ 0.13
CDH6P55285 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.85■□□□□ 0.13
CDH6P55285 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 AC123567.1-201ENST00000548294 1261 ntBASIC15.85■□□□□ 0.13
CDH6P55285 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.85■□□□□ 0.13
CDH6P55285 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.85■□□□□ 0.13
CDH6P55285 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.85■□□□□ 0.13
CDH6P55285 AC120045.2-201ENST00000567334 178 ntBASIC15.85■□□□□ 0.13
CDH6P55285 MIR4745-201ENST00000577608 62 ntBASIC15.85■□□□□ 0.13
CDH6P55285 RN7SL204P-201ENST00000582831 262 ntBASIC15.85■□□□□ 0.13
CDH6P55285 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.85■□□□□ 0.13
CDH6P55285 LINC00552-201ENST00000625151 2579 ntBASIC15.85■□□□□ 0.13
CDH6P55285 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.85■□□□□ 0.13
CDH6P55285 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.85■□□□□ 0.13
CDH6P55285 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.85■□□□□ 0.13
CDH6P55285 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.85■□□□□ 0.13
CDH6P55285 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDH6P55285 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.85■□□□□ 0.13
CDH6P55285 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDH6P55285 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CDH6P55285 AC007541.1-201ENST00000570282 1469 ntBASIC15.84■□□□□ 0.13
CDH6P55285 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDH6P55285 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
CDH6P55285 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
CDH6P55285 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDH6P55285 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.84■□□□□ 0.13
CDH6P55285 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.84■□□□□ 0.13
CDH6P55285 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.84■□□□□ 0.13
CDH6P55285 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDH6P55285 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDH6P55285 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDH6P55285 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDH6P55285 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDH6P55285 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDH6P55285 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDH6P55285 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDH6P55285 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.84■□□□□ 0.13
CDH6P55285 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDH6P55285 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
CDH6P55285 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDH6P55285 MIR661-201ENST00000384842 89 ntBASIC15.84■□□□□ 0.13
CDH6P55285 AC236430.1-201ENST00000402231 743 ntBASIC15.84■□□□□ 0.13
CDH6P55285 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.84■□□□□ 0.13
CDH6P55285 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.84■□□□□ 0.13
CDH6P55285 HMGN1P19-201ENST00000436976 333 ntBASIC15.84■□□□□ 0.13
CDH6P55285 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CDH6P55285 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC15.84■□□□□ 0.13
CDH6P55285 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.84■□□□□ 0.13
CDH6P55285 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
CDH6P55285 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.84■□□□□ 0.13
CDH6P55285 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.84■□□□□ 0.13
CDH6P55285 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.84■□□□□ 0.13
CDH6P55285 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.84■□□□□ 0.13
CDH6P55285 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms