Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MTND6P24-201ENST00000440466 518 ntBASIC14.99□□□□□ -0.01
VPS4BO75351 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.99□□□□□ -0.01
VPS4BO75351 AC104794.3-201ENST00000566840 1248 ntBASIC14.99□□□□□ -0.01
VPS4BO75351 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.99□□□□□ -0.01
VPS4BO75351 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.99□□□□□ -0.01
VPS4BO75351 AC015910.1-201ENST00000579400 975 ntBASIC14.99□□□□□ -0.01
VPS4BO75351 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 AC084346.2-201ENST00000607097 949 ntBASIC14.99□□□□□ -0.01
VPS4BO75351 AL589739.1-201ENST00000607720 493 ntBASIC14.99□□□□□ -0.01
VPS4BO75351 AC008738.7-201ENST00000609744 511 ntBASIC14.99□□□□□ -0.01
VPS4BO75351 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.99□□□□□ -0.01
VPS4BO75351 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.99□□□□□ -0.01
VPS4BO75351 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.99□□□□□ -0.01
VPS4BO75351 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.99□□□□□ -0.01
VPS4BO75351 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
VPS4BO75351 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.99□□□□□ -0.01
VPS4BO75351 AC140479.7-201ENST00000636301 2332 ntBASIC14.99□□□□□ -0.01
VPS4BO75351 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.99□□□□□ -0.01
VPS4BO75351 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.99□□□□□ -0.01
VPS4BO75351 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
VPS4BO75351 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
VPS4BO75351 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.98□□□□□ -0.01
VPS4BO75351 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
VPS4BO75351 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.98□□□□□ -0.01
VPS4BO75351 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
VPS4BO75351 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
VPS4BO75351 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.98□□□□□ -0.01
VPS4BO75351 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS4BO75351 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
VPS4BO75351 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.98□□□□□ -0.01
VPS4BO75351 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS4BO75351 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS4BO75351 SLED1-202ENST00000512051 380 ntBASIC14.98□□□□□ -0.01
VPS4BO75351 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.98□□□□□ -0.01
VPS4BO75351 AC135586.1-201ENST00000539323 574 ntBASIC14.98□□□□□ -0.01
VPS4BO75351 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.98□□□□□ -0.01
VPS4BO75351 BANF1P1-201ENST00000553684 263 ntBASIC14.98□□□□□ -0.01
VPS4BO75351 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS4BO75351 AC106886.1-201ENST00000568660 600 ntBASIC14.98□□□□□ -0.01
VPS4BO75351 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC14.98□□□□□ -0.01
VPS4BO75351 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.98□□□□□ -0.01
VPS4BO75351 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 AL606495.2-201ENST00000605867 535 ntBASIC14.98□□□□□ -0.01
VPS4BO75351 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS4BO75351 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.98□□□□□ -0.01
VPS4BO75351 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.98□□□□□ -0.01
VPS4BO75351 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS4BO75351 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS4BO75351 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 AC007686.3-201ENST00000619017 3487 ntBASIC14.98□□□□□ -0.01
VPS4BO75351 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS4BO75351 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS4BO75351 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
VPS4BO75351 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS4BO75351 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS4BO75351 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS4BO75351 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms