Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 CICP14-201ENST00000629111 2732 ntBASIC11.78□□□□□ -0.52
CCDC140Q96MF4 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 PCDHA3-202ENST00000532566 4594 ntBASIC11.78□□□□□ -0.52
CCDC140Q96MF4 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 BRF1-202ENST00000379932 884 ntTSL 5 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 KLF2P2-201ENST00000416807 1039 ntBASIC11.78□□□□□ -0.52
CCDC140Q96MF4 AC010740.1-201ENST00000417035 684 ntBASIC11.78□□□□□ -0.52
CCDC140Q96MF4 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 AL033527.5-201ENST00000641382 801 ntBASIC11.78□□□□□ -0.52
CCDC140Q96MF4 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC11.78□□□□□ -0.52
CCDC140Q96MF4 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 USP35-204ENST00000530267 2419 ntTSL 2 BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.52
CCDC140Q96MF4 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 COQ6-210ENST00000554920 649 ntTSL 3 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 AP001063.1-201ENST00000568332 529 ntBASIC11.77□□□□□ -0.53
CCDC140Q96MF4 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 ATF5-205ENST00000600336 682 ntTSL 2 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 ACTG1P22-201ENST00000603793 1099 ntBASIC11.77□□□□□ -0.53
CCDC140Q96MF4 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 AP005019.2-201ENST00000615104 511 ntBASIC11.77□□□□□ -0.53
CCDC140Q96MF4 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC11.77□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms