Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VMP1Q96GC9 AC074338.1-201ENST00000416825 156 ntBASIC14.69□□□□□ -0.06
VMP1Q96GC9 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VMP1Q96GC9 AC015922.1-201ENST00000421102 1152 ntBASIC14.69□□□□□ -0.06
VMP1Q96GC9 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.69□□□□□ -0.06
VMP1Q96GC9 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.69□□□□□ -0.06
VMP1Q96GC9 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
VMP1Q96GC9 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.69□□□□□ -0.06
VMP1Q96GC9 AC004790.1-201ENST00000612686 536 ntBASIC14.69□□□□□ -0.06
VMP1Q96GC9 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VMP1Q96GC9 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.69□□□□□ -0.06
VMP1Q96GC9 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VMP1Q96GC9 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
VMP1Q96GC9 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
VMP1Q96GC9 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
VMP1Q96GC9 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
VMP1Q96GC9 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VMP1Q96GC9 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VMP1Q96GC9 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VMP1Q96GC9 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
VMP1Q96GC9 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VMP1Q96GC9 AC018892.3-201ENST00000623986 2499 ntBASIC14.69□□□□□ -0.06
VMP1Q96GC9 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
VMP1Q96GC9 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.69□□□□□ -0.06
VMP1Q96GC9 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.69□□□□□ -0.06
VMP1Q96GC9 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VMP1Q96GC9 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
VMP1Q96GC9 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.69□□□□□ -0.06
VMP1Q96GC9 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VMP1Q96GC9 AL607033.1-201ENST00000623900 1599 ntBASIC14.68□□□□□ -0.06
VMP1Q96GC9 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.68□□□□□ -0.06
VMP1Q96GC9 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 AL359183.1-201ENST00000623796 2132 ntBASIC14.68□□□□□ -0.06
VMP1Q96GC9 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 AL589987.1-201ENST00000453380 819 ntBASIC14.68□□□□□ -0.06
VMP1Q96GC9 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 SLC7A15P-201ENST00000424028 1363 ntBASIC14.68□□□□□ -0.06
VMP1Q96GC9 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
VMP1Q96GC9 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VMP1Q96GC9 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VMP1Q96GC9 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
VMP1Q96GC9 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VMP1Q96GC9 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VMP1Q96GC9 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VMP1Q96GC9 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VMP1Q96GC9 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VMP1Q96GC9 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
VMP1Q96GC9 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
VMP1Q96GC9 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
VMP1Q96GC9 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
VMP1Q96GC9 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.67□□□□□ -0.06
VMP1Q96GC9 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms