Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
VPS13CQ709C8 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
VPS13CQ709C8 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC12.33□□□□□ -0.43
VPS13CQ709C8 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC12.33□□□□□ -0.43
VPS13CQ709C8 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC12.33□□□□□ -0.43
VPS13CQ709C8 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC12.33□□□□□ -0.43
VPS13CQ709C8 HNRNPA1P36-201ENST00000521313 955 ntBASIC12.33□□□□□ -0.43
VPS13CQ709C8 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC12.33□□□□□ -0.43
VPS13CQ709C8 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC12.33□□□□□ -0.43
VPS13CQ709C8 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
VPS13CQ709C8 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC12.33□□□□□ -0.44
VPS13CQ709C8 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC12.33□□□□□ -0.44
VPS13CQ709C8 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC12.33□□□□□ -0.44
VPS13CQ709C8 NUDT4P2-201ENST00000578341 546 ntBASIC12.33□□□□□ -0.44
VPS13CQ709C8 AC009884.2-201ENST00000603110 324 ntBASIC12.33□□□□□ -0.44
VPS13CQ709C8 AC012073.1-201ENST00000606114 1108 ntBASIC12.33□□□□□ -0.44
VPS13CQ709C8 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
VPS13CQ709C8 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC12.33□□□□□ -0.44
VPS13CQ709C8 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
VPS13CQ709C8 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC12.33□□□□□ -0.44
VPS13CQ709C8 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
VPS13CQ709C8 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC12.33□□□□□ -0.44
VPS13CQ709C8 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC12.33□□□□□ -0.44
VPS13CQ709C8 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC12.33□□□□□ -0.44
VPS13CQ709C8 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 AC008894.3-201ENST00000624324 3103 ntBASIC12.33□□□□□ -0.44
VPS13CQ709C8 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC12.33□□□□□ -0.44
VPS13CQ709C8 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC12.33□□□□□ -0.44
VPS13CQ709C8 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 STRN-202ENST00000379213 2254 ntTSL 5 BASIC12.33□□□□□ -0.44
VPS13CQ709C8 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC12.33□□□□□ -0.44
VPS13CQ709C8 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC12.33□□□□□ -0.44
VPS13CQ709C8 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
VPS13CQ709C8 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 AL807761.2-201ENST00000422849 729 ntBASIC12.32□□□□□ -0.44
VPS13CQ709C8 KRT17P4-201ENST00000429445 819 ntBASIC12.32□□□□□ -0.44
VPS13CQ709C8 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 RPS5-204ENST00000598098 536 ntTSL 2 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 USP4-203ENST00000415188 1454 ntTSL 3 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 AL360270.3-201ENST00000609118 1348 ntBASIC12.32□□□□□ -0.44
VPS13CQ709C8 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 TPM1-223ENST00000560445 485 ntTSL 3 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 AC009145.4-201ENST00000625119 1294 ntBASIC12.32□□□□□ -0.44
VPS13CQ709C8 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 AC018629.1-201ENST00000623381 1736 ntBASIC12.32□□□□□ -0.44
VPS13CQ709C8 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13CQ709C8 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC12.32□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms