Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.75■□□□□ 0.11
NEK3P51956 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
NEK3P51956 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
NEK3P51956 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.75■□□□□ 0.11
NEK3P51956 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
NEK3P51956 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NEK3P51956 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NEK3P51956 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NEK3P51956 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.75■□□□□ 0.11
NEK3P51956 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.75■□□□□ 0.11
NEK3P51956 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NEK3P51956 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NEK3P51956 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NEK3P51956 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
NEK3P51956 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NEK3P51956 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
NEK3P51956 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.75■□□□□ 0.11
NEK3P51956 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
NEK3P51956 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
NEK3P51956 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
NEK3P51956 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
NEK3P51956 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
NEK3P51956 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.74■□□□□ 0.11
NEK3P51956 AC005840.4-201ENST00000541242 2494 ntBASIC15.74■□□□□ 0.11
NEK3P51956 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
NEK3P51956 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.74■□□□□ 0.11
NEK3P51956 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.74■□□□□ 0.11
NEK3P51956 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
NEK3P51956 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.74■□□□□ 0.11
NEK3P51956 AL162726.2-201ENST00000438986 1017 ntBASIC15.74■□□□□ 0.11
NEK3P51956 AC007389.4-201ENST00000454674 793 ntBASIC15.74■□□□□ 0.11
NEK3P51956 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.74■□□□□ 0.11
NEK3P51956 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.74■□□□□ 0.11
NEK3P51956 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC15.74■□□□□ 0.11
NEK3P51956 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.74■□□□□ 0.11
NEK3P51956 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.74■□□□□ 0.11
NEK3P51956 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.74■□□□□ 0.11
NEK3P51956 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.74■□□□□ 0.11
NEK3P51956 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.74■□□□□ 0.11
NEK3P51956 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.74■□□□□ 0.11
NEK3P51956 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.74■□□□□ 0.11
NEK3P51956 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
NEK3P51956 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.74■□□□□ 0.11
NEK3P51956 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
NEK3P51956 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
NEK3P51956 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
NEK3P51956 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.74■□□□□ 0.11
NEK3P51956 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.74■□□□□ 0.11
NEK3P51956 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
NEK3P51956 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.73■□□□□ 0.11
NEK3P51956 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.73■□□□□ 0.11
NEK3P51956 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.73■□□□□ 0.11
NEK3P51956 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
NEK3P51956 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
NEK3P51956 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.73■□□□□ 0.11
NEK3P51956 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
NEK3P51956 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
NEK3P51956 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 OR8S1-201ENST00000310194 1080 ntBASIC15.73■□□□□ 0.11
NEK3P51956 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 AL133267.1-201ENST00000398220 340 ntBASIC15.73■□□□□ 0.11
NEK3P51956 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.73■□□□□ 0.11
NEK3P51956 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.73■□□□□ 0.11
NEK3P51956 AC134915.1-201ENST00000426461 574 ntBASIC15.73■□□□□ 0.11
NEK3P51956 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NEK3P51956 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.73■□□□□ 0.11
NEK3P51956 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC15.73■□□□□ 0.11
NEK3P51956 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.73■□□□□ 0.11
NEK3P51956 AL049840.4-201ENST00000602422 811 ntBASIC15.73■□□□□ 0.11
NEK3P51956 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms