Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL9A1P20849 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL9A1P20849 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL9A1P20849 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL9A1P20849 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
COL9A1P20849 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL9A1P20849 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
COL9A1P20849 SOD2-202ENST00000367054 815 ntTSL 2 BASIC15.52■□□□□ 0.08
COL9A1P20849 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL9A1P20849 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
COL9A1P20849 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL9A1P20849 OLA1P2-201ENST00000395519 1264 ntBASIC15.52■□□□□ 0.08
COL9A1P20849 AL357563.1-201ENST00000404728 395 ntBASIC15.52■□□□□ 0.08
COL9A1P20849 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC15.52■□□□□ 0.08
COL9A1P20849 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC15.52■□□□□ 0.08
COL9A1P20849 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL9A1P20849 AC114812.1-204ENST00000449669 728 ntBASIC15.52■□□□□ 0.08
COL9A1P20849 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL9A1P20849 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.52■□□□□ 0.08
COL9A1P20849 AC055748.1-201ENST00000489836 959 ntBASIC15.52■□□□□ 0.08
COL9A1P20849 AC100850.1-201ENST00000506768 649 ntBASIC15.52■□□□□ 0.08
COL9A1P20849 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
COL9A1P20849 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC15.52■□□□□ 0.08
COL9A1P20849 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC15.52■□□□□ 0.08
COL9A1P20849 AC090971.1-201ENST00000559302 510 ntTSL 2 BASIC15.52■□□□□ 0.08
COL9A1P20849 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC15.52■□□□□ 0.08
COL9A1P20849 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC15.52■□□□□ 0.08
COL9A1P20849 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC15.52■□□□□ 0.08
COL9A1P20849 PSME2-217ENST00000615264 874 ntTSL 5 BASIC15.52■□□□□ 0.08
COL9A1P20849 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.52■□□□□ 0.08
COL9A1P20849 PSME2-218ENST00000630027 185 ntTSL 3 BASIC15.52■□□□□ 0.08
COL9A1P20849 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL9A1P20849 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
COL9A1P20849 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
COL9A1P20849 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL9A1P20849 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.52■□□□□ 0.07
COL9A1P20849 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
COL9A1P20849 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.51■□□□□ 0.07
COL9A1P20849 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
COL9A1P20849 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.51■□□□□ 0.07
COL9A1P20849 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
COL9A1P20849 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
COL9A1P20849 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 RBPMSLP-201ENST00000433427 502 ntBASIC15.51■□□□□ 0.07
COL9A1P20849 PUDPP3-201ENST00000445368 636 ntBASIC15.51■□□□□ 0.07
COL9A1P20849 BCL2L12P1-201ENST00000508390 733 ntBASIC15.51■□□□□ 0.07
COL9A1P20849 AC087272.1-201ENST00000523624 533 ntBASIC15.51■□□□□ 0.07
COL9A1P20849 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC15.51■□□□□ 0.07
COL9A1P20849 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC15.51■□□□□ 0.07
COL9A1P20849 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC15.51■□□□□ 0.07
COL9A1P20849 AC021321.1-201ENST00000607397 1113 ntBASIC15.51■□□□□ 0.07
COL9A1P20849 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC15.51■□□□□ 0.07
COL9A1P20849 AC110057.1-201ENST00000636031 898 ntBASIC15.51■□□□□ 0.07
COL9A1P20849 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.51■□□□□ 0.07
COL9A1P20849 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
COL9A1P20849 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.51■□□□□ 0.07
COL9A1P20849 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL9A1P20849 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
COL9A1P20849 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.51■□□□□ 0.07
COL9A1P20849 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
COL9A1P20849 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.51■□□□□ 0.07
COL9A1P20849 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.51■□□□□ 0.07
COL9A1P20849 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
COL9A1P20849 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 WASH7P-201ENST00000488147 1351 ntBASIC15.5■□□□□ 0.07
COL9A1P20849 FAM90A2P-201ENST00000511144 1395 ntBASIC15.5■□□□□ 0.07
COL9A1P20849 FAM90A25P-201ENST00000528404 1395 ntBASIC15.5■□□□□ 0.07
COL9A1P20849 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.5■□□□□ 0.07
COL9A1P20849 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.5■□□□□ 0.07
COL9A1P20849 LINC02199-201ENST00000506655 2702 ntBASIC15.5■□□□□ 0.07
COL9A1P20849 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC15.5■□□□□ 0.07
COL9A1P20849 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
COL9A1P20849 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
COL9A1P20849 DKKL1P1-201ENST00000400550 698 ntBASIC15.5■□□□□ 0.07
COL9A1P20849 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms