Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.09■□□□□ 0.17
RTN3O95197 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.09■□□□□ 0.17
RTN3O95197 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.09■□□□□ 0.17
RTN3O95197 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.09■□□□□ 0.17
RTN3O95197 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.09■□□□□ 0.17
RTN3O95197 AC119751.2-201ENST00000504529 210 ntBASIC16.09■□□□□ 0.17
RTN3O95197 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.09■□□□□ 0.17
RTN3O95197 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC16.09■□□□□ 0.17
RTN3O95197 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.09■□□□□ 0.17
RTN3O95197 AC079316.1-201ENST00000548397 411 ntBASIC16.09■□□□□ 0.17
RTN3O95197 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.09■□□□□ 0.17
RTN3O95197 NAA38-206ENST00000576384 424 ntTSL 2 BASIC16.09■□□□□ 0.17
RTN3O95197 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
RTN3O95197 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.09■□□□□ 0.17
RTN3O95197 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
RTN3O95197 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.09■□□□□ 0.17
RTN3O95197 LARP4-220ENST00000615080 856 ntTSL 5 BASIC16.09■□□□□ 0.17
RTN3O95197 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.09■□□□□ 0.17
RTN3O95197 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.09■□□□□ 0.17
RTN3O95197 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.09■□□□□ 0.17
RTN3O95197 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC16.09■□□□□ 0.17
RTN3O95197 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
RTN3O95197 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.09■□□□□ 0.17
RTN3O95197 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC16.09■□□□□ 0.17
RTN3O95197 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.09■□□□□ 0.17
RTN3O95197 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 LRRC59-203ENST00000576448 1531 ntBASIC16.09■□□□□ 0.17
RTN3O95197 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
RTN3O95197 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
RTN3O95197 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
RTN3O95197 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
RTN3O95197 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
RTN3O95197 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.17
RTN3O95197 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.08■□□□□ 0.17
RTN3O95197 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
RTN3O95197 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
RTN3O95197 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
RTN3O95197 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RTN3O95197 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RTN3O95197 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RTN3O95197 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RTN3O95197 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC16.08■□□□□ 0.16
RTN3O95197 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
RTN3O95197 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC16.08■□□□□ 0.16
RTN3O95197 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RTN3O95197 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC16.08■□□□□ 0.16
RTN3O95197 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.08■□□□□ 0.16
RTN3O95197 KRT90P-201ENST00000549264 1064 ntBASIC16.08■□□□□ 0.16
RTN3O95197 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
RTN3O95197 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC16.08■□□□□ 0.16
RTN3O95197 AC132938.4-201ENST00000623835 848 ntBASIC16.08■□□□□ 0.16
RTN3O95197 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
RTN3O95197 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RTN3O95197 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.08■□□□□ 0.16
RTN3O95197 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
RTN3O95197 KRT8P14-201ENST00000414254 1442 ntBASIC16.08■□□□□ 0.16
RTN3O95197 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RTN3O95197 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
RTN3O95197 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RTN3O95197 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
RTN3O95197 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
RTN3O95197 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
RTN3O95197 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RTN3O95197 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
RTN3O95197 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RTN3O95197 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
RTN3O95197 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RTN3O95197 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RTN3O95197 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.07■□□□□ 0.16
RTN3O95197 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RTN3O95197 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
RTN3O95197 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RTN3O95197 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC16.07■□□□□ 0.16
RTN3O95197 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
RTN3O95197 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RTN3O95197 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
RTN3O95197 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.07■□□□□ 0.16
RTN3O95197 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
RTN3O95197 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RTN3O95197 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.07■□□□□ 0.16
RTN3O95197 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.07■□□□□ 0.16
RTN3O95197 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC16.07■□□□□ 0.16
RTN3O95197 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC16.07■□□□□ 0.16
RTN3O95197 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC16.07■□□□□ 0.16
RTN3O95197 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms