Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.11
PCDH9Q9HC56 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.77■□□□□ 0.11
PCDH9Q9HC56 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PCDH9Q9HC56 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
PCDH9Q9HC56 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
PCDH9Q9HC56 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
PCDH9Q9HC56 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.11
PCDH9Q9HC56 OR2I1P-210ENST00000642037 4691 ntBASIC15.77■□□□□ 0.11
PCDH9Q9HC56 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PCDH9Q9HC56 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 RARRES2P5-201ENST00000564013 466 ntBASIC15.76■□□□□ 0.11
PCDH9Q9HC56 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 SAMD11P1-201ENST00000571429 661 ntBASIC15.76■□□□□ 0.11
PCDH9Q9HC56 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 AC004233.3-201ENST00000607794 1269 ntBASIC15.76■□□□□ 0.11
PCDH9Q9HC56 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 BX640514.1-201ENST00000583223 1918 ntBASIC15.76■□□□□ 0.11
PCDH9Q9HC56 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
PCDH9Q9HC56 LILRP1-201ENST00000444199 1370 ntBASIC15.75■□□□□ 0.11
PCDH9Q9HC56 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 AC113367.3-201ENST00000508316 1912 ntBASIC15.75■□□□□ 0.11
PCDH9Q9HC56 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 MEP1AP4-201ENST00000423244 1087 ntBASIC15.75■□□□□ 0.11
PCDH9Q9HC56 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 OARD1-208ENST00000469104 704 ntTSL 2 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 AC093004.1-201ENST00000508850 424 ntBASIC15.75■□□□□ 0.11
PCDH9Q9HC56 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 AL391069.4-201ENST00000609583 481 ntBASIC15.75■□□□□ 0.11
PCDH9Q9HC56 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms