Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VCANP13611 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
VCANP13611 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
VCANP13611 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
VCANP13611 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
VCANP13611 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
VCANP13611 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.35■□□□□ 0.05
VCANP13611 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC15.35■□□□□ 0.05
VCANP13611 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
VCANP13611 CYP4F23P-201ENST00000593402 1579 ntBASIC15.35■□□□□ 0.05
VCANP13611 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
VCANP13611 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
VCANP13611 CICP11-201ENST00000434745 2827 ntBASIC15.35■□□□□ 0.05
VCANP13611 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
VCANP13611 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC15.35■□□□□ 0.05
VCANP13611 RNA5SP417-201ENST00000516459 108 ntBASIC15.35■□□□□ 0.05
VCANP13611 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC15.35■□□□□ 0.05
VCANP13611 AC007326.1-201ENST00000604539 458 ntBASIC15.35■□□□□ 0.05
VCANP13611 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
VCANP13611 WAC-202ENST00000347934 2839 ntTSL 5 BASIC15.35■□□□□ 0.05
VCANP13611 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.35■□□□□ 0.05
VCANP13611 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
VCANP13611 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
VCANP13611 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC15.35■□□□□ 0.05
VCANP13611 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
VCANP13611 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC15.35■□□□□ 0.05
VCANP13611 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC15.35■□□□□ 0.05
VCANP13611 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.35■□□□□ 0.05
VCANP13611 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.35■□□□□ 0.05
VCANP13611 MARK2P16-201ENST00000605714 1723 ntBASIC15.34■□□□□ 0.05
VCANP13611 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VCANP13611 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.34■□□□□ 0.05
VCANP13611 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VCANP13611 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VCANP13611 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC15.34■□□□□ 0.05
VCANP13611 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC15.34■□□□□ 0.05
VCANP13611 FDPSP7-201ENST00000429043 1054 ntBASIC15.34■□□□□ 0.05
VCANP13611 AC009884.2-201ENST00000603110 324 ntBASIC15.34■□□□□ 0.05
VCANP13611 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.34■□□□□ 0.05
VCANP13611 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC15.34■□□□□ 0.05
VCANP13611 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
VCANP13611 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VCANP13611 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VCANP13611 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VCANP13611 CSNK1G2P1-201ENST00000442675 955 ntBASIC15.34■□□□□ 0.05
VCANP13611 DPY19L2P5-201ENST00000456300 331 ntBASIC15.34■□□□□ 0.05
VCANP13611 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC15.34■□□□□ 0.05
VCANP13611 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC15.34■□□□□ 0.05
VCANP13611 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC15.34■□□□□ 0.05
VCANP13611 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
VCANP13611 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
VCANP13611 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VCANP13611 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VCANP13611 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
VCANP13611 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VCANP13611 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
VCANP13611 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
VCANP13611 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VCANP13611 RBFOX1-214ENST00000552089 1430 ntTSL 5 BASIC15.34■□□□□ 0.05
VCANP13611 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
VCANP13611 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
VCANP13611 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
VCANP13611 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
VCANP13611 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
VCANP13611 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.05
VCANP13611 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC15.33■□□□□ 0.05
VCANP13611 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
VCANP13611 HNRNPABP1-201ENST00000406003 734 ntBASIC15.33■□□□□ 0.05
VCANP13611 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC15.33■□□□□ 0.05
VCANP13611 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
VCANP13611 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC15.33■□□□□ 0.05
VCANP13611 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
VCANP13611 UBA52-214ENST00000599595 692 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.05
VCANP13611 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC15.33■□□□□ 0.05
VCANP13611 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.05
VCANP13611 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
VCANP13611 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.33■□□□□ 0.04
VCANP13611 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.33■□□□□ 0.04
VCANP13611 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VCANP13611 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms