Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
VIMP08670 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.41■□□□□ 0.06
VIMP08670 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC15.41■□□□□ 0.06
VIMP08670 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC15.41■□□□□ 0.06
VIMP08670 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.41■□□□□ 0.06
VIMP08670 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC15.41■□□□□ 0.06
VIMP08670 GHSR-202ENST00000427970 912 ntBASIC15.41■□□□□ 0.06
VIMP08670 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.41■□□□□ 0.06
VIMP08670 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.41■□□□□ 0.06
VIMP08670 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
VIMP08670 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.41■□□□□ 0.06
VIMP08670 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC15.41■□□□□ 0.06
VIMP08670 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.41■□□□□ 0.06
VIMP08670 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.41■□□□□ 0.06
VIMP08670 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.41■□□□□ 0.06
VIMP08670 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 AC105206.1-202ENST00000314927 2368 ntBASIC15.41■□□□□ 0.06
VIMP08670 AL356585.2-201ENST00000625078 2396 ntBASIC15.41■□□□□ 0.06
VIMP08670 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC15.41■□□□□ 0.06
VIMP08670 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
VIMP08670 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC15.41■□□□□ 0.06
VIMP08670 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC15.41■□□□□ 0.06
VIMP08670 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.41■□□□□ 0.06
VIMP08670 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
VIMP08670 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
VIMP08670 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 AL607033.1-201ENST00000623900 1599 ntBASIC15.41■□□□□ 0.06
VIMP08670 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC15.4■□□□□ 0.06
VIMP08670 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC15.4■□□□□ 0.06
VIMP08670 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
VIMP08670 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC15.4■□□□□ 0.06
VIMP08670 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
VIMP08670 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.4■□□□□ 0.06
VIMP08670 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
VIMP08670 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC15.4■□□□□ 0.06
VIMP08670 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.4■□□□□ 0.06
VIMP08670 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.4■□□□□ 0.06
VIMP08670 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC15.4■□□□□ 0.06
VIMP08670 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC15.4■□□□□ 0.06
VIMP08670 MIR4751-201ENST00000578027 74 ntBASIC15.4■□□□□ 0.06
VIMP08670 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.4■□□□□ 0.06
VIMP08670 AL445228.2-201ENST00000605589 952 ntBASIC15.4■□□□□ 0.06
VIMP08670 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC15.4■□□□□ 0.06
VIMP08670 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
VIMP08670 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.4■□□□□ 0.06
VIMP08670 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
VIMP08670 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.4■□□□□ 0.06
VIMP08670 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
VIMP08670 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 AC023090.2-201ENST00000625182 2110 ntBASIC15.4■□□□□ 0.06
VIMP08670 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VIMP08670 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
VIMP08670 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC15.39■□□□□ 0.05
VIMP08670 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC15.39■□□□□ 0.05
VIMP08670 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
VIMP08670 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
VIMP08670 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms