Protein–RNA interactions for Protein: P07949

RET, Proto-oncogene tyrosine-protein kinase receptor Ret, humanhuman

Predictions only

Length 1,114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETP07949 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC15.38■□□□□ 0.05
RETP07949 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
RETP07949 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.38■□□□□ 0.05
RETP07949 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.38■□□□□ 0.05
RETP07949 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC15.38■□□□□ 0.05
RETP07949 NKAIN1P1-201ENST00000435754 582 ntBASIC15.38■□□□□ 0.05
RETP07949 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC15.38■□□□□ 0.05
RETP07949 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC15.38■□□□□ 0.05
RETP07949 SERPINA13P-202ENST00000478994 924 ntBASIC15.38■□□□□ 0.05
RETP07949 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
RETP07949 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC15.38■□□□□ 0.05
RETP07949 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC15.38■□□□□ 0.05
RETP07949 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 FGFR3P5-201ENST00000564496 886 ntBASIC15.38■□□□□ 0.05
RETP07949 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.38■□□□□ 0.05
RETP07949 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC15.38■□□□□ 0.05
RETP07949 AC244157.2-201ENST00000616239 1006 ntBASIC15.38■□□□□ 0.05
RETP07949 AC079336.7-201ENST00000623428 1078 ntBASIC15.38■□□□□ 0.05
RETP07949 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.38■□□□□ 0.05
RETP07949 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.38■□□□□ 0.05
RETP07949 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
RETP07949 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.38■□□□□ 0.05
RETP07949 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.38■□□□□ 0.05
RETP07949 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RETP07949 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.37■□□□□ 0.05
RETP07949 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.37■□□□□ 0.05
RETP07949 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.37■□□□□ 0.05
RETP07949 SSR4P1-203ENST00000599569 2260 ntBASIC15.37■□□□□ 0.05
RETP07949 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
RETP07949 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.37■□□□□ 0.05
RETP07949 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC15.37■□□□□ 0.05
RETP07949 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 TPM3P8-201ENST00000330554 643 ntBASIC15.37■□□□□ 0.05
RETP07949 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.37■□□□□ 0.05
RETP07949 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 HNRNPA1P63-201ENST00000427917 963 ntBASIC15.37■□□□□ 0.05
RETP07949 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC15.37■□□□□ 0.05
RETP07949 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 AC044849.1-201ENST00000519737 1188 ntBASIC15.37■□□□□ 0.05
RETP07949 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC15.37■□□□□ 0.05
RETP07949 RN7SL48P-201ENST00000579283 293 ntBASIC15.37■□□□□ 0.05
RETP07949 MIR4750-201ENST00000584564 56 ntBASIC15.37■□□□□ 0.05
RETP07949 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC15.37■□□□□ 0.05
RETP07949 AL450472.2-201ENST00000603663 1156 ntBASIC15.37■□□□□ 0.05
RETP07949 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC15.37■□□□□ 0.05
RETP07949 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.37■□□□□ 0.05
RETP07949 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.37■□□□□ 0.05
RETP07949 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.37■□□□□ 0.05
RETP07949 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.37■□□□□ 0.05
RETP07949 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.37■□□□□ 0.05
RETP07949 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 TNRC18P2-201ENST00000417666 2714 ntBASIC15.37■□□□□ 0.05
RETP07949 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RETP07949 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.36■□□□□ 0.05
RETP07949 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
RETP07949 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.36■□□□□ 0.05
RETP07949 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms