Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC12.35□□□□□ -0.43
HMGB3O15347 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC12.35□□□□□ -0.43
HMGB3O15347 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
HMGB3O15347 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 RAB17-203ENST00000409576 466 ntTSL 3 BASIC12.35□□□□□ -0.43
HMGB3O15347 LSM5-204ENST00000409909 740 ntTSL 2 BASIC12.35□□□□□ -0.43
HMGB3O15347 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC12.35□□□□□ -0.43
HMGB3O15347 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC12.35□□□□□ -0.43
HMGB3O15347 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC12.35□□□□□ -0.43
HMGB3O15347 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
HMGB3O15347 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC12.35□□□□□ -0.43
HMGB3O15347 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC12.35□□□□□ -0.43
HMGB3O15347 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 HS6ST1P1-201ENST00000481504 1234 ntBASIC12.35□□□□□ -0.43
HMGB3O15347 KRT18P34-201ENST00000488218 1270 ntBASIC12.35□□□□□ -0.43
HMGB3O15347 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC12.35□□□□□ -0.43
HMGB3O15347 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC12.35□□□□□ -0.43
HMGB3O15347 AC021087.4-201ENST00000563761 564 ntBASIC12.35□□□□□ -0.43
HMGB3O15347 AC008667.4-201ENST00000607370 168 ntBASIC12.35□□□□□ -0.43
HMGB3O15347 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC12.35□□□□□ -0.43
HMGB3O15347 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC12.35□□□□□ -0.43
HMGB3O15347 ZBTB45P2-201ENST00000452245 1531 ntBASIC12.35□□□□□ -0.43
HMGB3O15347 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
HMGB3O15347 BNIP3P1-202ENST00000550043 1585 ntBASIC12.35□□□□□ -0.43
HMGB3O15347 HECW2-202ENST00000409111 6692 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
HMGB3O15347 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC12.34□□□□□ -0.43
HMGB3O15347 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
HMGB3O15347 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC12.34□□□□□ -0.43
HMGB3O15347 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC12.34□□□□□ -0.43
HMGB3O15347 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
HMGB3O15347 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC12.34□□□□□ -0.43
HMGB3O15347 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 TMEM104-204ENST00000582330 4679 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
HMGB3O15347 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC12.34□□□□□ -0.43
HMGB3O15347 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC12.34□□□□□ -0.43
HMGB3O15347 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 MRPL20P1-201ENST00000400819 433 ntBASIC12.34□□□□□ -0.43
HMGB3O15347 AL645939.2-201ENST00000427340 991 ntBASIC12.34□□□□□ -0.43
HMGB3O15347 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 SCARNA2-201ENST00000458748 420 ntBASIC12.34□□□□□ -0.43
HMGB3O15347 KRT18P31-201ENST00000506277 1292 ntBASIC12.34□□□□□ -0.43
HMGB3O15347 AC136632.2-201ENST00000512891 861 ntBASIC12.34□□□□□ -0.43
HMGB3O15347 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC12.34□□□□□ -0.43
HMGB3O15347 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
HMGB3O15347 MIR3909-201ENST00000579518 119 ntBASIC12.34□□□□□ -0.43
HMGB3O15347 AC107918.4-202ENST00000641623 219 ntBASIC12.34□□□□□ -0.43
HMGB3O15347 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC12.34□□□□□ -0.43
HMGB3O15347 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
HMGB3O15347 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
HMGB3O15347 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
HMGB3O15347 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 AC136759.1-202ENST00000530858 2194 ntBASIC12.34□□□□□ -0.43
HMGB3O15347 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
HMGB3O15347 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC12.34□□□□□ -0.43
HMGB3O15347 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC12.34□□□□□ -0.43
HMGB3O15347 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
HMGB3O15347 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC12.34□□□□□ -0.43
HMGB3O15347 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
HMGB3O15347 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HMGB3O15347 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC12.34□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms