Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 RPL17P11-201ENST00000417593 544 ntBASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 AL353637.1-201ENST00000451571 732 ntBASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 MESTP3-201ENST00000503460 968 ntBASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 MARK2P5-201ENST00000507649 634 ntBASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 CSH2-206ENST00000560142 749 ntTSL 5 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 CENPX-208ENST00000584347 799 ntTSL 2 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 AC138466.3-201ENST00000619983 221 ntBASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.62□□□□□ -0.07
PCDHGA1Q9Y5H4 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 NPPA-201ENST00000376476 728 ntTSL 3 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms