Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 AP006288.1-201ENST00000446065 395 ntBASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 RN7SL618P-201ENST00000477850 296 ntBASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 AC025181.2-201ENST00000606994 802 ntBASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 AC015656.1-201ENST00000624209 3578 ntBASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
CCDC54Q8NEL0 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC13.4□□□□□ -0.27
CCDC54Q8NEL0 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
CCDC54Q8NEL0 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 AL359258.3-201ENST00000622910 2331 ntBASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 TET3-201ENST00000305799 5174 ntTSL 5 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 AL031595.1-201ENST00000623969 4709 ntBASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC54Q8NEL0 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms